- s -

• SegmentFlowProperties() : SegmentFlowProperties< DIM >
• serialize() : AbstractVesselNetworkComponent< DIM > , AbstractVesselNetworkComponentFlowProperties< DIM > , AbstractVesselNetworkComponentProperties< DIM > , BaseParameterInstance , BaseUnits , CancerCellMutationState , DimensionalChastePoint< DIM > , LQRadiotherapyCellKiller< DIM > , MacrophageMutationState , MicrovesselSimulationModifier< DIM > , NodeFlowProperties< DIM > , Owen11CaBasedDivisionRule< SPACE_DIM > , Owen11CaUpdateRule< DIM > , Owen2011OxygenBasedCellCycleModel , Owen2011OxygenBasedCellCycleOdeSystem , Owen2011TrackingModifier< DIM > , ParameterCollection , ParameterInstance< UNIT > , QuiescentCancerCellMutationState , SegmentFlowProperties< DIM > , StalkCellMutationState , TipCellMutationState , VesselCellMutationState , VesselNode< DIM >
• SetAlpha() : AlarconHaematocritSolver< DIM > , BetteridgeHaematocritSolver< DIM >
• SetAlphaMax() : LQRadiotherapyCellKiller< DIM >
• SetAnastamosisRadius() : AngiogenesisSolver< DIM >
• SetAngiogenesisSolver() : MicrovesselSolver< DIM >
• SetAttractionStrength() : OffLatticeMigrationRule< DIM >
• SetAttributes() : DiscreteContinuumMesh< ELEMENT_DIM, SPACE_DIM >
• SetBetaMax() : LQRadiotherapyCellKiller< DIM >
• SetBibliographicInformation() : BaseParameterInstance
• SetBoundingDomain() : AbstractMigrationRule< DIM > , AngiogenesisSolver< DIM >
• SetCancerousRadiosensitivity() : LQRadiotherapyCellKiller< DIM >
• SetCellChemotacticParameter() : Owen2011MigrationRule< DIM >
• SetCellDataUpdateLabels() : MicrovesselSimulationModifier< DIM >
• SetCellMotilityParameter() : Owen2011MigrationRule< DIM >
• SetCellPopulation() : AbstractDiscreteContinuumSolver< DIM > , AbstractMigrationRule< DIM > , AngiogenesisSolver< DIM > , CellPopulationActorGenerator< DIM > , DiscreteContinuumMesh< ELEMENT_DIM, SPACE_DIM > , MicrovesselVtkScene< DIM > , RegularGrid< DIM >
• SetCellPopulationConcentrationScale() : MicrovesselSimulationModifier< DIM >
• SetCellPopulationLengthScale() : MicrovesselSimulationModifier< DIM >
• SetChemotacticStrength() : OffLatticeMigrationRule< DIM >
• SetComparisonId() : VesselNode< DIM >
• SetConstantInUConsumptionRatePerCell() : CellBasedDiscreteSource< DIM >
• SetConstantInUSinkRatePerSolutionQuantity() : SolutionDependentDiscreteSource< DIM >
• SetConstantInUValue() : DiscreteSource< DIM >
• SetContinuumConstantInUTerm() : AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , AbstractDiscreteContinuumNonLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >
• SetContinuumLinearInUTerm() : AbstractDiscreteContinuumNonLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >
• SetCriticalQuiescentDuration() : Owen2011OxygenBasedCellCycleModel
• SetCurrentQuiescenceOnsetTime() : Owen2011OxygenBasedCellCycleModel
• SetDecimateFeatureAngle() : SurfaceCleaner
• SetDecimateTargetReduction() : SurfaceCleaner
• SetDiffusionParameter() : Owen11CaUpdateRule< DIM >
• SetDiscreteContinuumMesh() : DiscreteContinuumMeshActorGenerator< DIM >
• SetDiscreteContinuumSolver() : AbstractMigrationRule< DIM > , AbstractSproutingRule< DIM >
• SetDiscreteContinuumSolversHaveCompatibleGridIndexing() : MicrovesselSolver< DIM >
• SetDomain() : DiscreteContinuumBoundaryCondition< DIM > , DiscreteContinuumMeshGenerator< ELEMENT_DIM, SPACE_DIM >
• SetDoseInjected() : LQRadiotherapyCellKiller< DIM >
• SetDoSmoothing() : BoundaryExtractor
• SetEdgeColor() : AbstractActorGenerator< DIM >
• SetEdgeOpacity() : RegularGridActorGenerator< DIM >
• SetElementSize() : ImageToMesh< DIM >
• SetEnterQuiescenceOxygenConcentration() : Owen2011OxygenBasedCellCycleModel
• SetExtents() : RegularGrid< DIM >
• SetFileHandler() : AbstractDiscreteContinuumSolver< DIM >
• SetFileName() : AbstractDiscreteContinuumSolver< DIM > , GeometryWriter
• SetFilename() : ImageReader , MeshReader , MultiFormatMeshWriter< DIM > , RegularGridWriter
• SetFileName() : VesselNetworkReader< DIM > , VesselNetworkWriter< DIM >
• SetFlowProperties() : Vessel< DIM > , VesselNode< DIM > , VesselSegment< DIM >
• SetFlowRate() : SegmentFlowProperties< DIM > , VesselFlowProperties< DIM >
• SetFlowSolver() : StructuralAdaptationSolver< DIM >
• SetG2Onset() : Owen2011OxygenBasedCellCycleModel
• SetGrid() : AbstractMigrationRule< DIM > , AbstractRegularGridDiscreteContinuumSolver< DIM > , AbstractSproutingRule< DIM > , LatticeBasedSproutingRule< DIM >
• SetGridSpacing() : NetworkToImage< DIM >
• SetGrowthStimulus() : SegmentFlowProperties< DIM > , VesselFlowProperties< DIM >
• SetGuess() : FiniteElementSolver< DIM >
• SetHaematocrit() : AlarconHaematocritSolver< DIM > , BetteridgeHaematocritSolver< DIM > , ConstantHaematocritSolver< DIM > , SegmentFlowProperties< DIM > , VesselFlowProperties< DIM >
• SetHalfMaxVegf() : Owen2011SproutingRule< DIM >
• SetHoles() : DiscreteContinuumMeshGenerator< ELEMENT_DIM, SPACE_DIM >
• SetId() : AbstractVesselNetworkComponent< DIM >
• SetImage() : RegularGridWriter
• SetImageDimension() : NetworkToImage< DIM >
• SetImageResizeFactors() : ImageReader
• SetImpedance() : SegmentFlowProperties< DIM > , VesselFlowProperties< DIM >
• SetIndex() : DimensionalChastePoint< DIM >
• SetInput() : BoundaryExtractor , GeometryWriter , ImageToMesh< DIM > , SurfaceCleaner
• SetInputRaw() : ImageToMesh< DIM >
• SetIsInputNode() : NodeFlowProperties< DIM >
• SetIsMigrating() : VesselNode< DIM >
• SetIsotropicDiffusionConstant() : AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , AbstractDiscreteContinuumNonLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >
• SetIsOutputNode() : NodeFlowProperties< DIM >
• SetIsSprouting() : AbstractMigrationRule< DIM >
• SetKm() : MetabolicStimulusCalculator< DIM >
• SetLabel() : AbstractDiscreteContinuumSolver< DIM > , Facet< DIM >
• SetLabelName() : DiscreteContinuumBoundaryCondition< DIM > , DiscreteSource< DIM >
• SetLeaveQuiescenceOxygenConcentration() : Owen2011OxygenBasedCellCycleModel
• SetLinearInUConsumptionRatePerCell() : CellBasedDiscreteSource< DIM >
• SetLinearInUSinkRatePerSolutionQuantity() : SolutionDependentDiscreteSource< DIM >
• SetLinearInUValue() : DiscreteSource< DIM >
• SetLinearSubdivisionNumber() : SurfaceCleaner
• SetLocation() : VesselNode< DIM >
• SetLowWallShearStressThreshold() : WallShearStressBasedRegressionSolver< DIM >
• SetMaxElementArea() : DiscreteContinuumMeshGenerator< ELEMENT_DIM, SPACE_DIM >
• SetMaximumTimeWithLowWallShearStress() : WallShearStressBasedRegressionSolver< DIM >
• SetMaxIterations() : AbstractStructuralAdaptationSolver< DIM >
• SetMaxRadius() : RadiusCalculator< DIM >
• SetMaxRandInitialPhase() : Owen2011OxygenBasedCellCycleModel
• SetMaxStimulus() : MetabolicStimulusCalculator< DIM >
• SetMergeCoincidentPoints() : VesselNetworkReader< DIM >
• SetMesh() : AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , AbstractDiscreteContinuumNonLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , AbstractUnstructuredGridDiscreteContinuumSolver< DIM > , DiscreteContinuumBoundaryCondition< DIM > , DiscreteSource< DIM > , MultiFormatMeshWriter< DIM >
• SetMichaelisMentenThreshold() : MichaelisMentenSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >
• SetMicrovesselSolver() : MicrovesselSimulationModifier< DIM >
• SetMigrationRule() : AngiogenesisSolver< DIM >
• SetMinRadius() : RadiusCalculator< DIM >
• SetMOnset() : Owen2011OxygenBasedCellCycleModel
• SetMovementProbability() : LatticeBasedMigrationRule< DIM >
• SetMutationState() : Owen2011OxygenBasedCellCycleOdeSystem
• SetName() : BaseParameterInstance
• SetNetwork() : AbstractMigrationRule< DIM > , NetworkToImage< DIM >
• SetNodeRadii() : VesselNetwork< DIM >
• SetNodeRadiiFromSegments() : VesselNetwork< DIM >
• SetNonLinearPde() : AbstractDiscreteContinuumSolver< DIM >
• SetNormalRadiosensitivity() : LQRadiotherapyCellKiller< DIM >
• SetOdeSolverTimeStep() : Owen2011OxygenBasedCellCycleModel
• SetOerAlphaMax() : LQRadiotherapyCellKiller< DIM >
• SetOerAlphaMin() : LQRadiotherapyCellKiller< DIM >
• SetOerBetaMax() : LQRadiotherapyCellKiller< DIM >
• SetOerBetaMin() : LQRadiotherapyCellKiller< DIM >
• SetOerConstant() : LQRadiotherapyCellKiller< DIM >
• SetOrigin() : RegularGrid< DIM >
• SetOutputData() : AbstractVesselNetworkComponent< DIM >
• SetOutputFileHandler() : AngiogenesisSolver< DIM > , MicrovesselSolver< DIM >
• SetOutputFileName() : AbstractStructuralAdaptationSolver< DIM >
• SetOutputFilePath() : MicrovesselVtkScene< DIM >
• SetOutputFormat() : GeometryWriter , MultiFormatMeshWriter< DIM >
• SetOutputFrequency() : MicrovesselSolver< DIM >
• SetPaddingFactors() : NetworkToImage< DIM >
• SetPart() : PartActorGenerator< DIM >
• SetPde() : AbstractDiscreteContinuumSolver< DIM >
• SetPermeability() : AbstractVesselNetworkComponentChemicalProperties< DIM >
• SetPlasmaViscosity() : ViscosityCalculator< DIM >
• SetPointColor() : AbstractActorGenerator< DIM >
• SetPoints() : DiscreteContinuumBoundaryCondition< DIM > , DiscreteSource< DIM >
• SetPointValues() : RegularGrid< DIM >
• SetPressure() : AbstractVesselNetworkComponentFlowProperties< DIM >
• SetQRef() : MetabolicStimulusCalculator< DIM >
• SetRadius() : AbstractVesselNetworkComponent< DIM > , Vessel< DIM >
• SetRadiusArrayName() : VesselNetworkReader< DIM >
• SetRadiusCalculator() : StructuralAdaptationSolver< DIM >
• SetReferenceConcentration() : AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , AbstractDiscreteContinuumSolver< DIM > , VesselBasedDiscreteSource< DIM >
• SetReferenceConcentrationScale() : BaseUnits , Owen2011OxygenBasedCellCycleModel
• SetReferenceHaematocrit() : VesselBasedDiscreteSource< DIM >
• SetReferenceLengthScale() : BaseUnits , DimensionalChastePoint< DIM > , Owen11CaBasedDivisionRule< SPACE_DIM > , Owen11CaUpdateRule< DIM > , Owen11CellPopulationGenerator< DIM > , Part< DIM > , VesselNetworkGenerator< DIM > , VesselNetworkReader< DIM > , VesselNetworkWriter< DIM > , VesselNode< DIM >
• SetReferenceTimeScale() : BaseUnits , Owen2011OxygenBasedCellCycleModel
• SetRegionMarkers() : DiscreteContinuumMeshGenerator< ELEMENT_DIM, SPACE_DIM >
• SetRegressionSolver() : MicrovesselSolver< DIM >
• SetRegressionTime() : VesselFlowProperties< DIM >
• SetRegularGrid() : AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , AbstractDiscreteContinuumNonLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , DiscreteContinuumBoundaryCondition< DIM > , DiscreteSource< DIM > , Owen11CaBasedDivisionRule< SPACE_DIM > , Owen11CaUpdateRule< DIM > , Owen11CellPopulationGenerator< DIM > , RegularGridActorGenerator< DIM >
• SetResamplingGridSize() : NetworkToSurface< DIM >
• SetResamplingSplineSize() : NetworkToSurface< DIM >
• SetSegmentProperties() : VesselNetwork< DIM >
• SetSegmentRadii() : VesselNetwork< DIM >
• SetSegmentViscosity() : VesselNetwork< DIM >
• SetShortDescription() : BaseParameterInstance
• SetShowEdges() : AbstractActorGenerator< DIM >
• SetShowPoints() : AbstractActorGenerator< DIM >
• SetShowVolume() : AbstractActorGenerator< DIM >
• SetSmoothingLength() : BoundaryExtractor
• SetSolution() : SolutionDependentDiscreteSource< DIM >
• SetSOnset() : Owen2011OxygenBasedCellCycleModel
• SetSource() : DiscreteContinuumBoundaryCondition< DIM >
• SetSpacing() : RegularGrid< DIM >
• SetSproutingProbability() : AbstractSproutingRule< DIM >
• SetSproutingRule() : AngiogenesisSolver< DIM >
• SetSproutingVelocity() : OffLatticeMigrationRule< DIM >
• SetStateRateMap() : CellStateDependentDiscreteSource< DIM >
• SetStateRateThresholdMap() : CellStateDependentDiscreteSource< DIM >
• SetStimulus() : ShrinkingStimulusCalculator< DIM >
• SetStructuralAdaptationSolver() : MicrovesselSolver< DIM >
• SetSubSegmentCutoff() : GreensFunctionSolver< DIM >
• SetSymbol() : BaseParameterInstance
• SetTargetSegmentLength() : VesselNetworkReader< DIM >
• SetTauP() : MechanicalStimulusCalculator< DIM >
• SetTauRef() : MechanicalStimulusCalculator< DIM >
• SetTHR() : AlarconHaematocritSolver< DIM > , BetteridgeHaematocritSolver< DIM >
• SetThresholdFractionOfNormalCellNeighbours() : Owen2011OxygenBasedCellCycleModel
• SetTimeIncrement() : AbstractStructuralAdaptationSolver< DIM >
• SetTimeOfRadiation() : LQRadiotherapyCellKiller< DIM >
• SetTimestep() : RadiusCalculator< DIM >
• SetTimeUntilRegression() : VesselFlowProperties< DIM >
• SetTissueDomain() : ImageToMesh< DIM >
• SetTolerance() : AbstractStructuralAdaptationSolver< DIM >
• SetTumourRadius() : Owen11CellPopulationGenerator< DIM >
• SetType() : DiscreteContinuumBoundaryCondition< DIM >
• Setup() : AbstractDiscreteContinuumSolver< DIM > , AbstractRegularGridDiscreteContinuumSolver< DIM > , AbstractUnstructuredGridDiscreteContinuumSolver< DIM > , FiniteDifferenceSolver< DIM >
• SetUp() : FlowSolver< DIM >
• Setup() : MicrovesselSolver< DIM >
• SetUpdatePdeEachSolve() : MicrovesselSolver< DIM >
• SetupFromModifier() : MicrovesselSolver< DIM >
• SetupSolve() : MicrovesselSimulationModifier< DIM > , Owen2011TrackingModifier< DIM >
• SetUpVtkGrid() : RegularGrid< DIM >
• SetUseDirectSolver() : FlowSolver< DIM >
• SetUseLinearSolveForGuess() : FiniteElementSolver< DIM >
• SetUseRegularGrid() : AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , AbstractDiscreteContinuumNonLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >
• SetUseSegmentRadii() : DistanceMap< DIM >
• SetUseSimpleNetonSolver() : FiniteElementSolver< DIM >
• SetUseVelocityBoundaryCondition() : NodeFlowProperties< DIM >
• SetValue() : DiscreteContinuumBoundaryCondition< DIM > , ParameterInstance< UNIT >
• SetVesselEndCutoff() : AbstractSproutingRule< DIM >
• SetVesselGrid() : AngiogenesisSolver< DIM >
• SetVesselNetwork() : AbstractDiscreteContinuumSolver< DIM > , AbstractSproutingRule< DIM > , AbstractStructuralAdaptationSolver< DIM > , AbstractVesselNetworkCalculator< DIM > , AngiogenesisSolver< DIM > , DiscreteContinuumMesh< ELEMENT_DIM, SPACE_DIM > , FlowSolver< DIM > , MicrovesselSolver< DIM > , NetworkToSurface< DIM > , Owen11CaBasedDivisionRule< SPACE_DIM > , Owen11CaUpdateRule< DIM > , Owen11CellPopulationGenerator< DIM > , RegressionSolver< DIM > , RegularGrid< DIM > , VesselNetworkActorGenerator< DIM > , VesselNetworkCellPopulationInteractor< DIM > , VesselNetworkGeometryCalculator< DIM > , VesselNetworkGraphCalculator< DIM > , VesselNetworkWriter< DIM >
• SetVesselPermeability() : VesselBasedDiscreteSource< DIM >
• SetViscosity() : SegmentFlowProperties< DIM > , VesselFlowProperties< DIM >
• SetVolumeColor() : AbstractActorGenerator< DIM >
• SetVolumeFraction() : CellPopulationMigrationRule< DIM >
• SetVolumeOpacity() : AbstractActorGenerator< DIM >
• SetWallShearStress() : SegmentFlowProperties< DIM > , VesselFlowProperties< DIM >
• SetWriteOutput() : AbstractStructuralAdaptationSolver< DIM >
• SetWriteSolution() : AbstractDiscreteContinuumSolver< DIM >
• Shared() : Vessel< DIM > , VesselSegment< DIM >
• SharedInstance() : BaseUnits , ParameterCollection
• ShrinkingStimulusCalculator() : ShrinkingStimulusCalculator< DIM >
• SolutionDependentDiscreteSource() : SolutionDependentDiscreteSource< DIM >
• Solve() : AbstractDiscreteContinuumSolver< DIM > , AbstractRegularGridDiscreteContinuumSolver< DIM > , AbstractStructuralAdaptationSolver< DIM > , AbstractUnstructuredGridDiscreteContinuumSolver< DIM > , DensityMap< DIM > , DistanceMap< DIM > , FiniteDifferenceSolver< DIM > , FiniteElementSolver< DIM > , FlowSolver< DIM > , FunctionMap< DIM > , GreensFunctionSolver< DIM > , LacunarityCalculator< DIM >
• StalkCellMutationState() : StalkCellMutationState
• Start() : MicrovesselVtkScene< DIM >
• StructuralAdaptationSolver() : StructuralAdaptationSolver< DIM >
• SurfaceCleaner() : SurfaceCleaner