#include <DistanceMap.hpp>

Inheritance diagram for DistanceMap< DIM >:

Collaboration diagram for DistanceMap< DIM >:

Public Member Functions
	DistanceMap ()

	~DistanceMap ()

void	SetUseSegmentRadii (bool useRadii)

void	Solve ()

Public Member Functions inherited from AbstractRegularGridDiscreteContinuumSolver< DIM >
	AbstractRegularGridDiscreteContinuumSolver ()

virtual	~AbstractRegularGridDiscreteContinuumSolver ()

boost::shared_ptr< RegularGrid< DIM > >	GetGrid ()

virtual std::vector< units::quantity< unit::concentration > >	GetConcentrations (const std::vector< DimensionalChastePoint< DIM > > &rSamplePoints)

virtual std::vector< units::quantity< unit::concentration > >	GetConcentrations (boost::shared_ptr< RegularGrid< DIM > > pGrid)

virtual std::vector< units::quantity< unit::concentration > >	GetConcentrations (boost::shared_ptr< DiscreteContinuumMesh< DIM > > pMesh)

virtual std::vector< double >	GetSolution (const std::vector< DimensionalChastePoint< DIM > > &rSamplePoints)

virtual std::vector< double >	GetSolution (boost::shared_ptr< RegularGrid< DIM > > pGrid)

virtual std::vector< double >	GetSolution (boost::shared_ptr< DiscreteContinuumMesh< DIM > > pMesh)

virtual vtkSmartPointer< vtkImageData >	GetVtkSolution ()

void	SetGrid (boost::shared_ptr< RegularGrid< DIM > > pRegularGrid)

virtual void	Setup ()

virtual void	UpdateCellData ()

virtual void	UpdateSolution (std::vector< double > &rData)

virtual void	UpdateSolution (std::vector< units::quantity< unit::concentration > > &rData)

virtual void	Update ()

virtual void	Write ()

Public Member Functions inherited from AbstractDiscreteContinuumSolver< DIM >
	AbstractDiscreteContinuumSolver ()

virtual	~AbstractDiscreteContinuumSolver ()

void	AddBoundaryCondition (boost::shared_ptr< DiscreteContinuumBoundaryCondition< DIM > > pBoundaryCondition)

bool	CellPopulationIsSet ()

virtual std::vector< units::quantity< unit::concentration > >	GetConcentrations ()

const std::string &	GetLabel ()

boost::shared_ptr< AbstractDiscreteContinuumNonLinearEllipticPde< DIM, DIM > >	GetNonLinearPde ()

boost::shared_ptr< AbstractDiscreteContinuumLinearEllipticPde< DIM, DIM > >	GetPde ()

units::quantity< unit::concentration >	GetReferenceConcentration ()

virtual std::vector< double >	GetSolution ()

bool	HasRegularGrid ()

bool	HasUnstructuredGrid ()

void	SetCellPopulation (AbstractCellPopulation< DIM > &rCellPopulation, units::quantity< unit::length > cellPopulationReferenceLength, units::quantity< unit::concentration > cellPopulationReferenceConcentration)

void	SetFileHandler (boost::shared_ptr< OutputFileHandler > pOutputFileHandler)

void	SetFileName (const std::string &rFilename)

void	SetLabel (const std::string &rLabel)

void	SetPde (boost::shared_ptr< AbstractDiscreteContinuumLinearEllipticPde< DIM, DIM > > pPde)

void	SetNonLinearPde (boost::shared_ptr< AbstractDiscreteContinuumNonLinearEllipticPde< DIM, DIM > > pPde)

void	SetReferenceConcentration (units::quantity< unit::concentration > referenceConcentration)

void	SetVesselNetwork (boost::shared_ptr< VesselNetwork< DIM > > pNetwork)

void	SetWriteSolution (bool write=true)

virtual void	UpdateSolution (const std::vector< double > &rData)

virtual void	UpdateSolution (const std::vector< units::quantity< unit::concentration > > &rData)

Static Public Member Functions
static boost::shared_ptr< DistanceMap< DIM > >	Create ()

Private Attributes
bool	mUseSegmentRadii

Additional Inherited Members
Protected Attributes inherited from AbstractRegularGridDiscreteContinuumSolver< DIM >
vtkSmartPointer< vtkImageData >	mpVtkSolution

boost::shared_ptr< RegularGrid< DIM > >	mpRegularGrid

Protected Attributes inherited from AbstractDiscreteContinuumSolver< DIM >
boost::shared_ptr< VesselNetwork< DIM > >	mpNetwork

AbstractCellPopulation< DIM > *	mpCellPopulation

units::quantity< unit::length >	mCellPopulationReferenceLength

units::quantity< unit::concentration >	mCellPopulationReferenceConcentration

boost::shared_ptr< OutputFileHandler >	mpOutputFileHandler

std::string	mFilename

std::string	mLabel

bool	IsSetupForSolve

bool	mWriteSolution

boost::shared_ptr< AbstractDiscreteContinuumLinearEllipticPde< DIM, DIM > >	mpPde

boost::shared_ptr< AbstractDiscreteContinuumNonLinearEllipticPde< DIM, DIM > >	mpNonLinearPde

std::vector< boost::shared_ptr< DiscreteContinuumBoundaryCondition< DIM > > >	mBoundaryConditions

units::quantity< unit::concentration >	mReferenceConcentration

std::vector< double >	mSolution

std::vector< units::quantity< unit::concentration > >	mConcentrations

bool	mHasRegularGrid

bool	mHasUnstructuredGrid

Detailed Description

template<unsigned DIM>
class DistanceMap< DIM >

Calculate a Euclidean distance map from vessel centrelines or surfaces to points on a regular grid

Definition at line 47 of file DistanceMap.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

DistanceMap< DIM >::DistanceMap ( )

Constructor

Definition at line 42 of file DistanceMap.cpp.

template<unsigned DIM>

DistanceMap< DIM >::~DistanceMap ( )

Destructor

Definition at line 58 of file DistanceMap.cpp.

Member Function Documentation

template<unsigned DIM>

boost::shared_ptr< DistanceMap< DIM > > DistanceMap< DIM >::Create ( )

static

Factory constructor method

Returns: a shared pointer to a new solver

Definition at line 51 of file DistanceMap.cpp.

Referenced by NetworkToImage< DIM >::Update().

template<unsigned DIM>

void DistanceMap< DIM >::SetUseSegmentRadii ( bool useRadii )

Set whether to use segment radii. Otherwise use centrelines.

Parameters

useRadii use segment radii

Definition at line 64 of file DistanceMap.cpp.

References DistanceMap< DIM >::mUseSegmentRadii.

template<unsigned DIM>

void DistanceMap< DIM >::Solve ( )

virtual

Calculate the map

Implements AbstractRegularGridDiscreteContinuumSolver< DIM >.

Definition at line 70 of file DistanceMap.cpp.

References AbstractDiscreteContinuumSolver< DIM >::mpNetwork, AbstractRegularGridDiscreteContinuumSolver< DIM >::mpRegularGrid, AbstractRegularGridDiscreteContinuumSolver< DIM >::mpVtkSolution, DistanceMap< DIM >::mUseSegmentRadii, AbstractDiscreteContinuumSolver< DIM >::mWriteSolution, AbstractRegularGridDiscreteContinuumSolver< DIM >::Setup(), AbstractRegularGridDiscreteContinuumSolver< DIM >::UpdateSolution(), and AbstractRegularGridDiscreteContinuumSolver< DIM >::Write().

Member Data Documentation

template<unsigned DIM>

bool DistanceMap< DIM >::mUseSegmentRadii

private

Use segment radius information in the calculation. Otherwise use centrelines.

Definition at line 52 of file DistanceMap.hpp.

Referenced by DistanceMap< DIM >::SetUseSegmentRadii(), and DistanceMap< DIM >::Solve().

The documentation for this class was generated from the following files:

projects/MicrovesselChaste/src/population/vessel/calculators/DistanceMap.hpp
projects/MicrovesselChaste/src/population/vessel/calculators/DistanceMap.cpp

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

template<unsigned DIM> class DistanceMap< DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned DIM>
class DistanceMap< DIM >