File List

Here is a list of all documented files with brief descriptions:

[detail level 12345678]

▼ projects
▼ MicrovesselChaste
▼ src
▼ geometry
► generators
MappableGridGenerator.cpp
MappableGridGenerator.hpp
NetworkToSurface.cpp
NetworkToSurface.hpp
VesselSurfaceGenerator.cpp
VesselSurfaceGenerator.hpp
VoronoiGenerator.cpp
VoronoiGenerator.hpp
► tools
BoundaryExtractor.cpp
BoundaryExtractor.hpp
GeometryTools.hpp
GeometryToolsImpl.hpp
SurfaceCleaner.cpp
SurfaceCleaner.hpp
► writers
GeometryWriter.cpp
GeometryWriter.hpp
Facet.cpp
Facet.hpp
Part.cpp
Part.hpp
Polygon.cpp
Polygon.hpp
▼ image
ImageReader.cpp
ImageReader.hpp
ImageToMesh.cpp
ImageToMesh.hpp
ImageToSurface.cpp
ImageToSurface.hpp
NetworkToImage.cpp
NetworkToImage.hpp
▼ mesh
DimensionalChastePoint.cpp
DimensionalChastePoint.hpp
DiscreteContinuumMesh.cpp
DiscreteContinuumMesh.hpp
DiscreteContinuumMeshGenerator.cpp
DiscreteContinuumMeshGenerator.hpp
MeshReader.cpp
MeshReader.hpp
MultiFormatMeshWriter.cpp
MultiFormatMeshWriter.hpp
RegularGrid.cpp
RegularGrid.hpp
RegularGridWriter.cpp
RegularGridWriter.hpp
▼ ode
Owen2011OxygenBasedCellCycleOdeSystem.cpp
Owen2011OxygenBasedCellCycleOdeSystem.hpp
Owen2011TrackingModifier.cpp
Owen2011TrackingModifier.hpp
▼ pde
► boundary_conditions
DiscreteContinuumBoundaryCondition.cpp
DiscreteContinuumBoundaryCondition.hpp
► discrete_sources
CellBasedDiscreteSource.cpp
CellBasedDiscreteSource.hpp
CellStateDependentDiscreteSource.cpp
CellStateDependentDiscreteSource.hpp
DiscreteSource.cpp
DiscreteSource.hpp
SolutionDependentDiscreteSource.cpp
SolutionDependentDiscreteSource.hpp
VesselBasedDiscreteSource.cpp
VesselBasedDiscreteSource.hpp
► problem
AbstractDiscreteContinuumLinearEllipticPde.cpp
AbstractDiscreteContinuumLinearEllipticPde.hpp
AbstractDiscreteContinuumNonLinearEllipticPde.cpp
AbstractDiscreteContinuumNonLinearEllipticPde.hpp
LinearSteadyStateDiffusionReactionPde.cpp
LinearSteadyStateDiffusionReactionPde.hpp
MichaelisMentenSteadyStateDiffusionReactionPde.cpp
MichaelisMentenSteadyStateDiffusionReactionPde.hpp
► solvers
AbstractDiscreteContinuumSolver.cpp
AbstractDiscreteContinuumSolver.hpp
AbstractRegularGridDiscreteContinuumSolver.cpp
AbstractRegularGridDiscreteContinuumSolver.hpp
AbstractUnstructuredGridDiscreteContinuumSolver.cpp
AbstractUnstructuredGridDiscreteContinuumSolver.hpp
FiniteDifferenceSolver.cpp
FiniteDifferenceSolver.hpp
FiniteElementSolver.cpp
FiniteElementSolver.hpp
FunctionMap.cpp
FunctionMap.hpp
GreensFunctionSolver.cpp
GreensFunctionSolver.hpp
▼ population
► cell
► cycle
Owen2011OxygenBasedCellCycleModel.cpp
Owen2011OxygenBasedCellCycleModel.hpp
► killers
LQRadiotherapyCellKiller.cpp
LQRadiotherapyCellKiller.hpp
► properties
► mutations
CancerCellMutationState.cpp
CancerCellMutationState.hpp
MacrophageMutationState.cpp
MacrophageMutationState.hpp
QuiescentCancerCellMutationState.cpp
QuiescentCancerCellMutationState.hpp
StalkCellMutationState.cpp
StalkCellMutationState.hpp
TipCellMutationState.cpp
TipCellMutationState.hpp
VesselCellMutationState.cpp
VesselCellMutationState.hpp
Owen11CaBasedDivisionRule.cpp
Owen11CaBasedDivisionRule.hpp
Owen11CaUpdateRule.cpp
Owen11CaUpdateRule.hpp
Owen11CellPopulationGenerator.cpp
Owen11CellPopulationGenerator.hpp
► vessel
► calculators
DensityMap.cpp
DensityMap.hpp
DistanceMap.cpp
DistanceMap.hpp
LacunarityCalculator.cpp
LacunarityCalculator.hpp
VesselNetworkGeometryCalculator.cpp
VesselNetworkGeometryCalculator.hpp
VesselNetworkGraphCalculator.cpp
VesselNetworkGraphCalculator.hpp
► generators
VesselNetworkGenerator.cpp
VesselNetworkGenerator.hpp
► properties
AbstractVesselNetworkComponentChemicalProperties.cpp
AbstractVesselNetworkComponentChemicalProperties.hpp
AbstractVesselNetworkComponentFlowProperties.cpp
AbstractVesselNetworkComponentFlowProperties.hpp
AbstractVesselNetworkComponentProperties.cpp
AbstractVesselNetworkComponentProperties.hpp
NodeFlowProperties.cpp
NodeFlowProperties.hpp
SegmentFlowProperties.cpp
SegmentFlowProperties.hpp
VesselFlowProperties.cpp
VesselFlowProperties.hpp
► readers
CsvVesselNetworkReader.cpp
CsvVesselNetworkReader.hpp
VesselNetworkReader.cpp
VesselNetworkReader.hpp
► writers
VesselNetworkWriter.cpp
VesselNetworkWriter.hpp
AbstractVesselNetworkComponent.cpp
AbstractVesselNetworkComponent.hpp
Vessel.cpp
Vessel.hpp
VesselNetwork.cpp
VesselNetwork.hpp
VesselNode.cpp
VesselNode.hpp
VesselSegment.cpp
VesselSegment.hpp
VesselNetworkCellPopulationInteractor.cpp
VesselNetworkCellPopulationInteractor.hpp
▼ simulation
► angiogenesis
► migration_rules
► lattice
CellPopulationMigrationRule.cpp
CellPopulationMigrationRule.hpp
LatticeBasedMigrationRule.cpp
LatticeBasedMigrationRule.hpp
Owen2011MigrationRule.cpp
Owen2011MigrationRule.hpp
► off_lattice
OffLatticeMigrationRule.cpp
OffLatticeMigrationRule.hpp
AbstractMigrationRule.cpp
AbstractMigrationRule.hpp
► regression
RegressionSolver.cpp
RegressionSolver.hpp
WallShearStressBasedRegressionSolver.cpp
WallShearStressBasedRegressionSolver.hpp
► sprouting_rules
AbstractSproutingRule.cpp
AbstractSproutingRule.hpp
LatticeBasedSproutingRule.cpp
LatticeBasedSproutingRule.hpp
OffLatticeSproutingRule.cpp
OffLatticeSproutingRule.hpp
Owen2011SproutingRule.cpp
Owen2011SproutingRule.hpp
AngiogenesisSolver.cpp
AngiogenesisSolver.hpp
► flow
► calculators
► haematocrit
AbstractHaematocritSolver.cpp
AbstractHaematocritSolver.hpp
AlarconHaematocritSolver.cpp
AlarconHaematocritSolver.hpp
BetteridgeHaematocritSolver.cpp
BetteridgeHaematocritSolver.hpp
ConstantHaematocritSolver.cpp
ConstantHaematocritSolver.hpp
AbstractVesselNetworkCalculator.cpp
AbstractVesselNetworkCalculator.hpp
MechanicalStimulusCalculator.cpp
MechanicalStimulusCalculator.hpp
MetabolicStimulusCalculator.cpp
MetabolicStimulusCalculator.hpp
RadiusCalculator.cpp
RadiusCalculator.hpp
ShrinkingStimulusCalculator.cpp
ShrinkingStimulusCalculator.hpp
VesselImpedanceCalculator.cpp
VesselImpedanceCalculator.hpp
ViscosityCalculator.cpp
ViscosityCalculator.hpp
WallShearStressCalculator.cpp
WallShearStressCalculator.hpp
► structural_adaptation
AbstractStructuralAdaptationSolver.cpp
AbstractStructuralAdaptationSolver.hpp
StructuralAdaptationSolver.cpp
StructuralAdaptationSolver.hpp
FlowSolver.cpp
FlowSolver.hpp
MicrovesselSimulationModifier.cpp
MicrovesselSimulationModifier.hpp
MicrovesselSolver.cpp
MicrovesselSolver.hpp
▼ utility
► literature_parameters
GenericParameters.cpp
GenericParameters.hpp
Owen11Parameters.cpp
Owen11Parameters.hpp
Secomb04Parameters.cpp
Secomb04Parameters.hpp
► visualization
AbstractActorGenerator.cpp
AbstractActorGenerator.hpp
CellPopulationActorGenerator.cpp
CellPopulationActorGenerator.hpp
DiscreteContinuumMeshActorGenerator.cpp
DiscreteContinuumMeshActorGenerator.hpp
MicrovesselVtkScene.cpp
MicrovesselVtkScene.hpp
PartActorGenerator.cpp
PartActorGenerator.hpp
RegularGridActorGenerator.cpp
RegularGridActorGenerator.hpp
VesselNetworkActorGenerator.cpp
VesselNetworkActorGenerator.hpp
BaseParameterInstance.cpp
BaseParameterInstance.hpp
BaseUnits.cpp
BaseUnits.hpp
ParameterCollection.cpp
ParameterCollection.hpp
ParameterInstance.cpp
ParameterInstance.hpp
UnitCollection.hpp