AbstractRegularGridDiscreteContinuumSolver.hpp

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#ifndef ABSTRACTREGULARGRIDDISCRETECONTINUUMSOLVER_HPP_
#define ABSTRACTREGULARGRIDDISCRETECONTINUUMSOLVER_HPP_

#include <vector>
#include <string>
#define _BACKWARD_BACKWARD_WARNING_H 1 //Cut out the vtk deprecated warning for now (gcc4.3)
#include <vtkImageData.h>
#include <vtkSmartPointer.h>
#include "SmartPointers.hpp"
#include "UblasIncludes.hpp"
#include "AbstractDiscreteContinuumSolver.hpp"
#include "RegularGrid.hpp"
#include "UnitCollection.hpp"

template<unsigned DIM>
class AbstractRegularGridDiscreteContinuumSolver : public AbstractDiscreteContinuumSolver<DIM>
{
    using AbstractDiscreteContinuumSolver<DIM>::GetConcentrations;
    using AbstractDiscreteContinuumSolver<DIM>::GetSolution;
    using AbstractDiscreteContinuumSolver<DIM>::UpdateSolution;

protected:

    vtkSmartPointer<vtkImageData> mpVtkSolution;

    boost::shared_ptr<RegularGrid<DIM> > mpRegularGrid;

public:

    AbstractRegularGridDiscreteContinuumSolver();

    virtual ~AbstractRegularGridDiscreteContinuumSolver();

    boost::shared_ptr<RegularGrid<DIM> > GetGrid();

    virtual std::vector<units::quantity<unit::concentration> > GetConcentrations(const std::vector<DimensionalChastePoint<DIM> >& rSamplePoints);
    virtual std::vector<units::quantity<unit::concentration> > GetConcentrations(boost::shared_ptr<RegularGrid<DIM> > pGrid);

    virtual std::vector<units::quantity<unit::concentration> > GetConcentrations(boost::shared_ptr<DiscreteContinuumMesh<DIM> > pMesh);

    virtual std::vector<double> GetSolution(const std::vector<DimensionalChastePoint<DIM> >& rSamplePoints);

    virtual std::vector<double> GetSolution(boost::shared_ptr<RegularGrid<DIM> > pGrid);

    virtual std::vector<double> GetSolution(boost::shared_ptr<DiscreteContinuumMesh<DIM> > pMesh);

    virtual vtkSmartPointer<vtkImageData> GetVtkSolution();

    void SetGrid(boost::shared_ptr<RegularGrid<DIM> > pRegularGrid);

    virtual void Setup();

    virtual void UpdateCellData();

    virtual void UpdateSolution(std::vector<double>& rData);

    virtual void UpdateSolution(std::vector<units::quantity<unit::concentration> >& rData);

    virtual void Update();

    virtual void Solve() = 0;

    virtual void Write();
};

#endif /* ABSTRACTREGULARGRIDDISCRETECONTINUUMSOLVER_HPP_ */