AbstractDiscreteContinuumSolver.cpp

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#include "AbstractDiscreteContinuumSolver.hpp"
#include "BaseUnits.hpp"

template<unsigned DIM>
AbstractDiscreteContinuumSolver<DIM>::AbstractDiscreteContinuumSolver()
    :   mpNetwork(),
        mpCellPopulation(NULL),
        mCellPopulationReferenceLength(BaseUnits::Instance()->GetReferenceLengthScale()),
        mCellPopulationReferenceConcentration(BaseUnits::Instance()->GetReferenceConcentrationScale()),
        mpOutputFileHandler(),
        mFilename(),
        mLabel("Default"),
        IsSetupForSolve(false),
        mWriteSolution(false),
        mpPde(),
        mpNonLinearPde(),
        mBoundaryConditions(),
        mReferenceConcentration(BaseUnits::Instance()->GetReferenceConcentrationScale()),
        mSolution(),
        mConcentrations(),
        mHasRegularGrid(false),
        mHasUnstructuredGrid(false)
{

}

template<unsigned DIM>
AbstractDiscreteContinuumSolver<DIM>::~AbstractDiscreteContinuumSolver()
{

}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::AddBoundaryCondition(boost::shared_ptr<DiscreteContinuumBoundaryCondition<DIM> > pBoundaryCondition)
{
    mBoundaryConditions.push_back(pBoundaryCondition);
}

template<unsigned DIM>
bool AbstractDiscreteContinuumSolver<DIM>::CellPopulationIsSet()
{
    return bool(mpCellPopulation);
}

template<unsigned DIM>
std::vector<units::quantity<unit::concentration> > AbstractDiscreteContinuumSolver<DIM>::GetConcentrations()
{
    return mConcentrations;
}

template<unsigned DIM>
const std::string& AbstractDiscreteContinuumSolver<DIM>::GetLabel()
{
    return mLabel;
}

template<unsigned DIM>
boost::shared_ptr<AbstractDiscreteContinuumLinearEllipticPde<DIM, DIM> > AbstractDiscreteContinuumSolver<DIM>::GetPde()
{
    if(!mpPde)
    {
        EXCEPTION("A pde has not been set.");
    }
    return mpPde;
}

template<unsigned DIM>
boost::shared_ptr<AbstractDiscreteContinuumNonLinearEllipticPde<DIM, DIM> > AbstractDiscreteContinuumSolver<DIM>::GetNonLinearPde()
{
    if(!mpNonLinearPde)
    {
        EXCEPTION("A nonlinear pde has not been set.");
    }
    return mpNonLinearPde;
}

template<unsigned DIM>
units::quantity<unit::concentration> AbstractDiscreteContinuumSolver<DIM>::GetReferenceConcentration()
{
    return mReferenceConcentration;
}

template<unsigned DIM>
std::vector<double> AbstractDiscreteContinuumSolver<DIM>::GetSolution()
{
    return mSolution;
}

template<unsigned DIM>
bool AbstractDiscreteContinuumSolver<DIM>::HasRegularGrid()
{
    return mHasRegularGrid;
}

template<unsigned DIM>
bool AbstractDiscreteContinuumSolver<DIM>::HasUnstructuredGrid()
{
    return mHasUnstructuredGrid;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::SetCellPopulation(AbstractCellPopulation<DIM>& rCellPopulation,
                                                             units::quantity<unit::length> cellPopulationReferenceLength,
                                                             units::quantity<unit::concentration> cellPopulationReferenceConcentration)
{
    mpCellPopulation = &rCellPopulation;
    mCellPopulationReferenceLength = cellPopulationReferenceLength;
    mCellPopulationReferenceConcentration = cellPopulationReferenceConcentration;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::SetFileHandler(boost::shared_ptr<OutputFileHandler> pOutputFileHandler)
{
    mpOutputFileHandler = pOutputFileHandler;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::SetFileName(const std::string& rFilename)
{
    mFilename = rFilename;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::SetLabel(const std::string& rLabel)
{
    mLabel = rLabel;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::SetPde(boost::shared_ptr<AbstractDiscreteContinuumLinearEllipticPde<DIM, DIM> > pPde)
{
    mpPde = pPde;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::SetNonLinearPde(boost::shared_ptr<AbstractDiscreteContinuumNonLinearEllipticPde<DIM, DIM> > pPde)
{
    mpNonLinearPde = pPde;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::SetReferenceConcentration(units::quantity<unit::concentration> referenceConcentration)
{
    mReferenceConcentration = referenceConcentration;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::SetVesselNetwork(boost::shared_ptr<VesselNetwork<DIM> > pNetwork)
{
    mpNetwork = pNetwork;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::SetWriteSolution(bool write)
{
    mWriteSolution = write;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::UpdateSolution(const std::vector<double>& data)
{
    mSolution = data;
}

template<unsigned DIM>
void AbstractDiscreteContinuumSolver<DIM>::UpdateSolution(const std::vector<units::quantity<unit::concentration> >& data)
{
    mConcentrations = data;
}

// Explicit instantiation
template class AbstractDiscreteContinuumSolver<2> ;
template class AbstractDiscreteContinuumSolver<3> ;