MicrovesselSimulationModifier.hpp

/*

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*/

#ifndef MICROVESSELSIMULATIONMODIFIER_HPP_
#define MICROVESSELSIMULATIONMODIFIER_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
#include "AbstractCellBasedSimulationModifier.hpp"
#include "MicrovesselSolver.hpp"

template<unsigned DIM>
class MicrovesselSimulationModifier : public AbstractCellBasedSimulationModifier<DIM,DIM>
{
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellBasedSimulationModifier<DIM,DIM> >(*this);
    }

private:

    boost::shared_ptr<MicrovesselSolver<DIM> > mpSolver;

    std::vector<std::string> mUpdateLabels;

    units::quantity<unit::length> mCellPopulationReferenceLength;

    units::quantity<unit::concentration> mCellPopulationReferenceConcentration;

public:

    MicrovesselSimulationModifier();

    virtual ~MicrovesselSimulationModifier();

    static boost::shared_ptr<MicrovesselSimulationModifier<DIM> > Create();

    void OutputSimulationModifierParameters(out_stream& rParamsFile);

    void SetCellDataUpdateLabels(std::vector<std::string> labels);

    void SetMicrovesselSolver(boost::shared_ptr<MicrovesselSolver<DIM> > pSolver);

    virtual void SetupSolve(AbstractCellPopulation<DIM,DIM>& rCellPopulation, std::string outputDirectory);

    void SetCellPopulationLengthScale(units::quantity<unit::length> cellLengthScale);

    void SetCellPopulationConcentrationScale(units::quantity<unit::concentration> cellConcentrationScale);

    virtual void UpdateAtEndOfTimeStep(AbstractCellPopulation<DIM,DIM>& rCellPopulation);

    void UpdateCellData(AbstractCellPopulation<DIM,DIM>& rCellPopulation);

};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(MicrovesselSimulationModifier)

#endif /*MicrovesselSimulationModifier_HPP_*/