SolutionDependentDiscreteSource.cpp

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#include "SolutionDependentDiscreteSource.hpp"
#include "AbstractCellPopulation.hpp"
#include "VesselNetwork.hpp"
#include "GeometryTools.hpp"

template<unsigned DIM>
SolutionDependentDiscreteSource<DIM>::SolutionDependentDiscreteSource()
    :   DiscreteSource<DIM>(),
        mpSolution(),
        mConstantInUSinkRatePerSolutionQuantity(0.0*unit::per_second),
        mLinearInUSinkRatePerSolutionQuantity(0.0*unit::metre_cubed_per_mole_per_second)
{

}

template<unsigned DIM>
SolutionDependentDiscreteSource<DIM>::~SolutionDependentDiscreteSource()
{

}

template<unsigned DIM>
boost::shared_ptr<SolutionDependentDiscreteSource<DIM> > SolutionDependentDiscreteSource<DIM>::Create()
{
    MAKE_PTR(SolutionDependentDiscreteSource<DIM>, pSelf);
    return pSelf;
}

template<unsigned DIM>
std::vector<units::quantity<unit::concentration_flow_rate> > SolutionDependentDiscreteSource<DIM>::GetConstantInUMeshValues()
{
    if(!this->mpMesh)
    {
        EXCEPTION("A mesh is required for this type of source");
    }

    std::vector<units::quantity<unit::concentration_flow_rate> > values(this->mpMesh->GetNumElements(), 0.0*unit::mole_per_metre_cubed_per_second);
    if(mpSolution.size() != this->mpMesh->GetNumElements())
    {
        EXCEPTION("A solution sampled on the mesh is required for this type of source");
    }
    for(unsigned idx=0; idx<this->mpMesh->GetNumElements(); idx++)
    {
        values[idx] = mpSolution[idx]*mConstantInUSinkRatePerSolutionQuantity;
    }
    return values;
}

template<unsigned DIM>
std::vector<units::quantity<unit::rate> > SolutionDependentDiscreteSource<DIM>::GetLinearInUMeshValues()
{
    if(!this->mpMesh)
    {
        EXCEPTION("A mesh is required for this type of source");
    }

    std::vector<units::quantity<unit::rate> > values(this->mpMesh->GetNumElements(), 0.0*unit::per_second);
    if(mpSolution.size() != this->mpMesh->GetNumElements())
    {
        EXCEPTION("A solution sampled on the mesh is required for this type of source");
    }
    for(unsigned idx=0; idx<this->mpMesh->GetNumElements(); idx++)
    {
        values[idx] = mpSolution[idx]*mLinearInUSinkRatePerSolutionQuantity;
    }
    return values;
}

template<unsigned DIM>
std::vector<units::quantity<unit::concentration_flow_rate> > SolutionDependentDiscreteSource<DIM>::GetConstantInURegularGridValues()
{
    std::vector<units::quantity<unit::concentration_flow_rate> > values(this->mpRegularGrid->GetNumberOfPoints(), 0.0*unit::mole_per_metre_cubed_per_second);
    if(mpSolution.size() != this->mpRegularGrid->GetNumberOfPoints())
    {
        EXCEPTION("A solution sampled on the grid is required for this type of source");
    }
    for(unsigned idx=0; idx<this->mpRegularGrid->GetNumberOfPoints(); idx++)
    {
        values[idx] = mpSolution[idx]*mConstantInUSinkRatePerSolutionQuantity;
    }
    return values;
}

template<unsigned DIM>
std::vector<units::quantity<unit::rate> > SolutionDependentDiscreteSource<DIM>::GetLinearInURegularGridValues()
{
    std::vector<units::quantity<unit::rate> > values(this->mpRegularGrid->GetNumberOfPoints(), 0.0*unit::per_second);
    if(mpSolution.size() != this->mpRegularGrid->GetNumberOfPoints())
    {
        EXCEPTION("A solution sampled on the grid is required for this type of source");
    }
    for(unsigned idx=0; idx<this->mpRegularGrid->GetNumberOfPoints(); idx++)
    {
        values[idx] = mpSolution[idx]*mLinearInUSinkRatePerSolutionQuantity;
    }
    return values;
}

template<unsigned DIM>
void SolutionDependentDiscreteSource<DIM>::SetSolution(std::vector<units::quantity<unit::concentration> > solution)
{
    mpSolution = solution;
}

template<unsigned DIM>
void SolutionDependentDiscreteSource<DIM>::SetConstantInUSinkRatePerSolutionQuantity(units::quantity<unit::rate> value)
{
    mConstantInUSinkRatePerSolutionQuantity = value;
}

template<unsigned DIM>
void SolutionDependentDiscreteSource<DIM>::SetLinearInUSinkRatePerSolutionQuantity(units::quantity<unit::rate_per_concentration> value)
{
    mLinearInUSinkRatePerSolutionQuantity = value;
}

// Explicit instantiation
template class SolutionDependentDiscreteSource<2>;
template class SolutionDependentDiscreteSource<3>;