VesselNetworkCellPopulationInteractor.hpp

/*

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#ifndef VESSELNETWORKCELLPOPULATIONINTERACTOR_HPP
#define VESSELNETWORKCELLPOPULATIONINTERACTOR_HPP

#include <vector>
#include <string>
#include "VesselNetwork.hpp"
#include "AbstractCellPopulation.hpp"
#include "AbstractCellMutationState.hpp"
#include "UnitCollection.hpp"

template<unsigned DIM>
class VesselNetworkCellPopulationInteractor
{

protected:

    boost::shared_ptr<VesselNetwork<DIM> > mpNetwork;

public:

    VesselNetworkCellPopulationInteractor();

    virtual ~VesselNetworkCellPopulationInteractor();

    void LabelVesselsInCellPopulation(AbstractCellPopulation<DIM>& cellPopulation,  units::quantity<unit::length> cellLengthScale,
                                      boost::shared_ptr<AbstractCellMutationState> pTipMutationState,
                                      boost::shared_ptr<AbstractCellMutationState> pStalkState,
                                      double threshold = 1.25e-6);

    void PartitionNetworkOverCells(AbstractCellPopulation<DIM>& rCellPopulation, units::quantity<unit::length> cellLengthScale, double threshold = 1.25e-6);

    void KillNonVesselOverlappingCells(AbstractCellPopulation<DIM>& rCellPopulation,  units::quantity<unit::length> cellLengthScale, double threshold = 1.25e-6);

    void KillOverlappingVesselCells(AbstractCellPopulation<DIM>& rCellPopulation,  units::quantity<unit::length> cellLengthScale, double threshold = 1.25e-6);

    void SetVesselNetwork(boost::shared_ptr<VesselNetwork<DIM> > pNetwork);

};

#endif /* VESSELNETWORKCELLPOPULATIONINTERACTOR_HPP */