#include <VesselNetworkCellPopulationInteractor.hpp>

Collaboration diagram for VesselNetworkCellPopulationInteractor< DIM >:

Public Member Functions
	VesselNetworkCellPopulationInteractor ()

virtual	~VesselNetworkCellPopulationInteractor ()

void	LabelVesselsInCellPopulation (AbstractCellPopulation< DIM > &cellPopulation, units::quantity< unit::length > cellLengthScale, boost::shared_ptr< AbstractCellMutationState > pTipMutationState, boost::shared_ptr< AbstractCellMutationState > pStalkState, double threshold=1.25e-6)

void	PartitionNetworkOverCells (AbstractCellPopulation< DIM > &rCellPopulation, units::quantity< unit::length > cellLengthScale, double threshold=1.25e-6)

void	KillNonVesselOverlappingCells (AbstractCellPopulation< DIM > &rCellPopulation, units::quantity< unit::length > cellLengthScale, double threshold=1.25e-6)

void	KillOverlappingVesselCells (AbstractCellPopulation< DIM > &rCellPopulation, units::quantity< unit::length > cellLengthScale, double threshold=1.25e-6)

void	SetVesselNetwork (boost::shared_ptr< VesselNetwork< DIM > > pNetwork)

Protected Attributes
boost::shared_ptr< VesselNetwork< DIM > >	mpNetwork

Detailed Description

template<unsigned DIM>
class VesselNetworkCellPopulationInteractor< DIM >

The class manages interactions between vessel networks and cell populations. It helps to 'decompartmentalize' each framework by describe interactions in this class rather than individual population classes.

Definition at line 51 of file VesselNetworkCellPopulationInteractor.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

VesselNetworkCellPopulationInteractor< DIM >::VesselNetworkCellPopulationInteractor ( )

Constructor.

Definition at line 39 of file VesselNetworkCellPopulationInteractor.cpp.

template<unsigned DIM>

VesselNetworkCellPopulationInteractor< DIM >::~VesselNetworkCellPopulationInteractor ( )

virtual

Destructor.

Definition at line 46 of file VesselNetworkCellPopulationInteractor.cpp.

Member Function Documentation

template<unsigned DIM>

void VesselNetworkCellPopulationInteractor< DIM >::KillNonVesselOverlappingCells	(	AbstractCellPopulation< DIM > &	rCellPopulation,
		units::quantity< unit::length >	cellLengthScale,
		double	threshold = `1.25e-6`
	)

Remove any cells not overlapping with the vessel network. Does not label the cells.

Parameters

rCellPopulation	the cell population
threshold	the max distance from a cell location to vessel centre for killing.

Definition at line 106 of file VesselNetworkCellPopulationInteractor.cpp.

References DimensionalChastePoint< DIM >::GetDistance(), and VesselNetworkCellPopulationInteractor< DIM >::mpNetwork.

template<unsigned DIM>

void VesselNetworkCellPopulationInteractor< DIM >::KillOverlappingVesselCells	(	AbstractCellPopulation< DIM > &	rCellPopulation,
		units::quantity< unit::length >	cellLengthScale,
		double	threshold = `1.25e-6`
	)

Remove any cells overlapping with the vessel network. Does not label the cells.

Parameters

rCellPopulation	the cell population
threshold	the max distance from a cell location to vessel centre for killing.

Definition at line 125 of file VesselNetworkCellPopulationInteractor.cpp.

References DimensionalChastePoint< DIM >::GetDistance(), and VesselNetworkCellPopulationInteractor< DIM >::mpNetwork.

template<unsigned DIM>

void VesselNetworkCellPopulationInteractor< DIM >::LabelVesselsInCellPopulation	(	AbstractCellPopulation< DIM > &	cellPopulation,
		units::quantity< unit::length >	cellLengthScale,
		boost::shared_ptr< AbstractCellMutationState >	pTipMutationState,
		boost::shared_ptr< AbstractCellMutationState >	pStalkState,
		double	threshold = `1.25e-6`
	)

Set any cells in a population that overlaps with a vessel to either the tip or stalk cell mutation state.

Parameters

cellPopulation	the cell population
pTipMutationState	the mutation state for vessel tips
pStalkState	the mutation state for non tip regions
threshold	the max distance from a cell location to vessel centre for labelling

Definition at line 52 of file VesselNetworkCellPopulationInteractor.cpp.

References DimensionalChastePoint< DIM >::GetDistance(), and VesselNetworkCellPopulationInteractor< DIM >::mpNetwork.

template<unsigned DIM>

void VesselNetworkCellPopulationInteractor< DIM >::PartitionNetworkOverCells	(	AbstractCellPopulation< DIM > &	rCellPopulation,
		units::quantity< unit::length >	cellLengthScale,
		double	threshold = `1.25e-6`
	)

Divide vessels in the network between cell locations in the cell population by adding new nodes at locations coincident with cells.

Parameters

rCellPopulation	the cell population
threshold	tolerance for point to vessel calculation

Definition at line 78 of file VesselNetworkCellPopulationInteractor.cpp.

References DimensionalChastePoint< DIM >::GetDistance(), and VesselNetworkCellPopulationInteractor< DIM >::mpNetwork.

Referenced by Owen11CellPopulationGenerator< DIM >::Update().

template<unsigned DIM>

void VesselNetworkCellPopulationInteractor< DIM >::SetVesselNetwork ( boost::shared_ptr< VesselNetwork< DIM > > pNetwork )

Set the vessel network

Parameters

pNetwork the vessel network

Definition at line 144 of file VesselNetworkCellPopulationInteractor.cpp.

References VesselNetworkCellPopulationInteractor< DIM >::mpNetwork.

Referenced by Owen11CellPopulationGenerator< DIM >::Update().

Member Data Documentation

template<unsigned DIM>

boost::shared_ptr<VesselNetwork<DIM> > VesselNetworkCellPopulationInteractor< DIM >::mpNetwork

protected

The vessel network can be stored here. The cell population is not stored.

Definition at line 59 of file VesselNetworkCellPopulationInteractor.hpp.

Referenced by VesselNetworkCellPopulationInteractor< DIM >::KillNonVesselOverlappingCells(), VesselNetworkCellPopulationInteractor< DIM >::KillOverlappingVesselCells(), VesselNetworkCellPopulationInteractor< DIM >::LabelVesselsInCellPopulation(), VesselNetworkCellPopulationInteractor< DIM >::PartitionNetworkOverCells(), and VesselNetworkCellPopulationInteractor< DIM >::SetVesselNetwork().

The documentation for this class was generated from the following files:

projects/MicrovesselChaste/src/population/VesselNetworkCellPopulationInteractor.hpp
projects/MicrovesselChaste/src/population/VesselNetworkCellPopulationInteractor.cpp

Public Member Functions

Protected Attributes

Detailed Description

template<unsigned DIM> class VesselNetworkCellPopulationInteractor< DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned DIM>
class VesselNetworkCellPopulationInteractor< DIM >