Owen2011MigrationRule.hpp

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#ifndef OWEN2011MIGRATIONRULE_HPP_
#define OWEN2011MIGRATIONRULE_HPP_

#include <vector>
#include <string>
#include "VesselNode.hpp"
#include "SmartPointers.hpp"
#include "LatticeBasedMigrationRule.hpp"
#include "RegularGrid.hpp"
#include "UnitCollection.hpp"

template<unsigned DIM>
class Owen2011MigrationRule : public LatticeBasedMigrationRule<DIM>
{

protected:

    units::quantity<unit::diffusivity> mCellMotility;

    units::quantity<unit::diffusivity_per_concentration> mCellChemotacticParameter;

    std::vector<units::quantity<unit::concentration> > mVegfField;

public:

    Owen2011MigrationRule();

    virtual ~Owen2011MigrationRule();

    static boost::shared_ptr<Owen2011MigrationRule<DIM> > Create();

    std::vector<int> GetIndices(const std::vector<boost::shared_ptr<VesselNode<DIM> > >& rNodes);

    void SetCellChemotacticParameter(units::quantity<unit::diffusivity_per_concentration> cellChemotacticParameter);

    void SetCellMotilityParameter(units::quantity<unit::diffusivity> cellMotility);

private:

    std::vector<double> GetNeighbourMovementProbabilities(boost::shared_ptr<VesselNode<DIM> > pNode,
                                                           std::vector<unsigned> neighbourIndices, unsigned gridIndex);
};

#endif /* OWEN2011MIGRATIONRULE_HPP_ */