Owen11CellPopulationGenerator.hpp

/*

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#ifndef OWEN11CELLPOPULATIONGENERATOR_HPP_
#define OWEN11CELLPOPULATIONGENERATOR_HPP_

#include <vector>
#include "Part.hpp"
#include "SmartPointers.hpp"
#include "VesselNetwork.hpp"
#include "RegularGrid.hpp"
#include "UnitCollection.hpp"
#include "AbstractCellMutationState.hpp"
#include "CaBasedCellPopulation.hpp"
#include "PottsMeshGenerator.hpp"

template<unsigned DIM>
class Owen11CellPopulationGenerator
{
    boost::shared_ptr<VesselNetwork<DIM> > mpVesselNetwork;

    boost::shared_ptr<RegularGrid<DIM> > mpRegularGrid;

    boost::shared_ptr<PottsMeshGenerator<DIM> > mpPottsMeshGenerator;

    boost::shared_ptr<AbstractCellMutationState> mpCancerCellMutationState;

    boost::shared_ptr<AbstractCellMutationState> mpNormalCellMutationState;

    boost::shared_ptr<AbstractCellMutationState> mpStalkCellMutationState;

    units::quantity<unit::length> mReferenceLength;

    units::quantity<unit::length> mTumourRadius;

    units::quantity<unit::length> mCellPopulationReferenceLength;


public:

    Owen11CellPopulationGenerator();

    static boost::shared_ptr<Owen11CellPopulationGenerator<DIM> > Create();

    ~Owen11CellPopulationGenerator();

    void SetVesselNetwork(boost::shared_ptr<VesselNetwork<DIM> > pNetwork);

    void SetRegularGrid(boost::shared_ptr<RegularGrid<DIM> > pGrid);

    void SetReferenceLengthScale(units::quantity<unit::length> lengthScale);

    void SetTumourRadius(units::quantity<unit::length> tumourRadius);

    boost::shared_ptr<CaBasedCellPopulation<DIM> > Update();
};

#endif /* Owen11CellPopulationGenerator_HPP_*/