#include <Owen11CellPopulationGenerator.hpp>

Collaboration diagram for Owen11CellPopulationGenerator< DIM >:

Public Member Functions
	Owen11CellPopulationGenerator ()

	~Owen11CellPopulationGenerator ()

void	SetVesselNetwork (boost::shared_ptr< VesselNetwork< DIM > > pNetwork)

void	SetRegularGrid (boost::shared_ptr< RegularGrid< DIM > > pGrid)

void	SetReferenceLengthScale (units::quantity< unit::length > lengthScale)

void	SetTumourRadius (units::quantity< unit::length > tumourRadius)

boost::shared_ptr< CaBasedCellPopulation< DIM > >	Update ()

Static Public Member Functions
static boost::shared_ptr< Owen11CellPopulationGenerator< DIM > >	Create ()

Private Attributes
boost::shared_ptr< VesselNetwork< DIM > >	mpVesselNetwork

boost::shared_ptr< RegularGrid< DIM > >	mpRegularGrid

boost::shared_ptr< PottsMeshGenerator< DIM > >	mpPottsMeshGenerator

boost::shared_ptr< AbstractCellMutationState >	mpCancerCellMutationState

boost::shared_ptr< AbstractCellMutationState >	mpNormalCellMutationState

boost::shared_ptr< AbstractCellMutationState >	mpStalkCellMutationState

units::quantity< unit::length >	mReferenceLength

units::quantity< unit::length >	mTumourRadius

units::quantity< unit::length >	mCellPopulationReferenceLength

Detailed Description

template<unsigned DIM>
class Owen11CellPopulationGenerator< DIM >

This class generates a CaBasedCellPopulation on a regular grid filled with 'normal' cells and a tumour spheroid of specified radius in the centre. It also sets up a suitable cell cycle model, mutation states and population writers.

Definition at line 54 of file Owen11CellPopulationGenerator.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

Owen11CellPopulationGenerator< DIM >::Owen11CellPopulationGenerator ( )

Constructor

Definition at line 61 of file Owen11CellPopulationGenerator.cpp.

template<unsigned DIM>

Owen11CellPopulationGenerator< DIM >::~Owen11CellPopulationGenerator ( )

Desctructor

Definition at line 83 of file Owen11CellPopulationGenerator.cpp.

Member Function Documentation

template<unsigned DIM>

boost::shared_ptr< Owen11CellPopulationGenerator< DIM > > Owen11CellPopulationGenerator< DIM >::Create ( )

static

Factory constructor method

Returns: a shared pointer to a new population

Definition at line 76 of file Owen11CellPopulationGenerator.cpp.

template<unsigned DIM>

void Owen11CellPopulationGenerator< DIM >::SetReferenceLengthScale ( units::quantity< unit::length > lengthScale )

Set the reference length

Parameters

lengthScale the reference length

Definition at line 101 of file Owen11CellPopulationGenerator.cpp.

References Owen11CellPopulationGenerator< DIM >::mReferenceLength.

template<unsigned DIM>

void Owen11CellPopulationGenerator< DIM >::SetRegularGrid ( boost::shared_ptr< RegularGrid< DIM > > pGrid )

Set the regular grid

Parameters

pGrid the regular grid

Definition at line 95 of file Owen11CellPopulationGenerator.cpp.

References Owen11CellPopulationGenerator< DIM >::mpRegularGrid.

template<unsigned DIM>

void Owen11CellPopulationGenerator< DIM >::SetTumourRadius ( units::quantity< unit::length > tumourRadius )

Set the tumour radius

Parameters

tumourRadius the tumour radius

Definition at line 107 of file Owen11CellPopulationGenerator.cpp.

References Owen11CellPopulationGenerator< DIM >::mTumourRadius.

template<unsigned DIM>

void Owen11CellPopulationGenerator< DIM >::SetVesselNetwork ( boost::shared_ptr< VesselNetwork< DIM > > pNetwork )

Set the vessel network

Parameters

pNetwork the vessel network

Definition at line 89 of file Owen11CellPopulationGenerator.cpp.

References Owen11CellPopulationGenerator< DIM >::mpVesselNetwork.

template<unsigned DIM>

boost::shared_ptr< CaBasedCellPopulation< DIM > > Owen11CellPopulationGenerator< DIM >::Update ( )

Generate the cell population

Returns: a pointer to the cell population

Definition at line 113 of file Owen11CellPopulationGenerator.cpp.

References Part< DIM >::Create(), BaseUnits::Instance(), Owen11CellPopulationGenerator< DIM >::mCellPopulationReferenceLength, Owen11CellPopulationGenerator< DIM >::mpCancerCellMutationState, GenericParameters::mpGasConcentrationAtStp, Secomb04Parameters::mpOxygenVolumetricSolubility, Owen11CellPopulationGenerator< DIM >::mpPottsMeshGenerator, Owen11CellPopulationGenerator< DIM >::mpRegularGrid, Owen11CellPopulationGenerator< DIM >::mpVesselNetwork, Owen11CellPopulationGenerator< DIM >::mReferenceLength, Owen11CellPopulationGenerator< DIM >::mTumourRadius, VesselNetworkCellPopulationInteractor< DIM >::PartitionNetworkOverCells(), and VesselNetworkCellPopulationInteractor< DIM >::SetVesselNetwork().

Member Data Documentation

template<unsigned DIM>

units::quantity<unit::length> Owen11CellPopulationGenerator< DIM >::mCellPopulationReferenceLength

private

The reference length scale for the cellpopulation.

Definition at line 101 of file Owen11CellPopulationGenerator.hpp.

Referenced by Owen11CellPopulationGenerator< DIM >::Update().

template<unsigned DIM>

boost::shared_ptr<AbstractCellMutationState> Owen11CellPopulationGenerator< DIM >::mpCancerCellMutationState

private

Mutation state for cancer cells

Definition at line 75 of file Owen11CellPopulationGenerator.hpp.

Referenced by Owen11CellPopulationGenerator< DIM >::Update().

template<unsigned DIM>

boost::shared_ptr<AbstractCellMutationState> Owen11CellPopulationGenerator< DIM >::mpNormalCellMutationState

private

Mutation state for normal cells

Definition at line 80 of file Owen11CellPopulationGenerator.hpp.

template<unsigned DIM>

boost::shared_ptr<PottsMeshGenerator<DIM> > Owen11CellPopulationGenerator< DIM >::mpPottsMeshGenerator

private

A potts mesh generator. We store this because we can't let it go out of scope in the lifetime of the Owen11CellPopulationGenerator.

Definition at line 70 of file Owen11CellPopulationGenerator.hpp.

Referenced by Owen11CellPopulationGenerator< DIM >::Update().

template<unsigned DIM>

boost::shared_ptr<RegularGrid<DIM> > Owen11CellPopulationGenerator< DIM >::mpRegularGrid

private

A grid for the cells

Definition at line 64 of file Owen11CellPopulationGenerator.hpp.

Referenced by Owen11CellPopulationGenerator< DIM >::SetRegularGrid(), and Owen11CellPopulationGenerator< DIM >::Update().

template<unsigned DIM>

boost::shared_ptr<AbstractCellMutationState> Owen11CellPopulationGenerator< DIM >::mpStalkCellMutationState

private

Mutation state for vessel stalk endothelial cells

Definition at line 85 of file Owen11CellPopulationGenerator.hpp.

template<unsigned DIM>

boost::shared_ptr<VesselNetwork<DIM> > Owen11CellPopulationGenerator< DIM >::mpVesselNetwork

private

A vessel network

Definition at line 59 of file Owen11CellPopulationGenerator.hpp.

Referenced by Owen11CellPopulationGenerator< DIM >::SetVesselNetwork(), and Owen11CellPopulationGenerator< DIM >::Update().

template<unsigned DIM>

units::quantity<unit::length> Owen11CellPopulationGenerator< DIM >::mReferenceLength

private

The reference length scale for the population, default in microns. This is needed as units can't be combined with c_vectors, which hold the cell's location.

Definition at line 91 of file Owen11CellPopulationGenerator.hpp.

Referenced by Owen11CellPopulationGenerator< DIM >::SetReferenceLengthScale(), and Owen11CellPopulationGenerator< DIM >::Update().

template<unsigned DIM>

units::quantity<unit::length> Owen11CellPopulationGenerator< DIM >::mTumourRadius

private

The tumour radius

Definition at line 96 of file Owen11CellPopulationGenerator.hpp.

Referenced by Owen11CellPopulationGenerator< DIM >::SetTumourRadius(), and Owen11CellPopulationGenerator< DIM >::Update().

The documentation for this class was generated from the following files:

projects/MicrovesselChaste/src/population/cell/Owen11CellPopulationGenerator.hpp
projects/MicrovesselChaste/src/population/cell/Owen11CellPopulationGenerator.cpp

Public Member Functions

Static Public Member Functions

Private Attributes

Detailed Description

template<unsigned DIM> class Owen11CellPopulationGenerator< DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned DIM>
class Owen11CellPopulationGenerator< DIM >