CellPopulationMigrationRule.hpp

/*

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#ifndef CELLPOPULATIONMIGRATIONRULE_HPP_
#define CELLPOPULATIONMIGRATIONRULE_HPP_

#include <vector>
#include <string>
#include "LatticeBasedMigrationRule.hpp"
#include "AbstractCellMutationState.hpp"
#include "VesselNode.hpp"
#include "SmartPointers.hpp"
#include "AbstractCellPopulation.hpp"

template<unsigned DIM>
class CellPopulationMigrationRule : public LatticeBasedMigrationRule<DIM>
{

protected:

    std::map<boost::shared_ptr<AbstractCellMutationState> , double > mVolumeFractionMap;

    std::vector<std::vector<CellPtr> > mPointCellMap;

public:

    CellPopulationMigrationRule();

    virtual ~CellPopulationMigrationRule();

    static boost::shared_ptr<CellPopulationMigrationRule<DIM> > Create();

    virtual std::vector<int> GetIndices(const std::vector<boost::shared_ptr<VesselNode<DIM> > >& rNodes);

    void SetVolumeFraction(boost::shared_ptr<AbstractCellMutationState> mutation_state, double volume_fraction);

    double GetOccupyingVolumeFraction(boost::shared_ptr<AbstractCellMutationState> mutation_state);

protected:

    virtual std::vector<double> GetNeighbourMovementProbabilities(boost::shared_ptr<VesselNode<DIM> > pNode,
                                                           std::vector<unsigned> neighbourIndices, unsigned gridIndex);

};

#endif /* CELLPOPULATIONMIGRATIONRULE_HPP_ */