AbstractMigrationRule.hpp

/*

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 */

#ifndef ABSTRACTMIGRATIONRULE_HPP_
#define ABSTRACTMIGRATIONRULE_HPP_

#include <vector>
#include <string>
#include "VesselNode.hpp"
#include "SmartPointers.hpp"
#include "AbstractDiscreteContinuumSolver.hpp"
#include "AbstractCellPopulation.hpp"
#include "RegularGrid.hpp"
#include "Part.hpp"
#include "DimensionalChastePoint.hpp"

template<unsigned DIM>
class AbstractMigrationRule
{

protected:

    boost::shared_ptr<AbstractDiscreteContinuumSolver<DIM> > mpSolver;

    boost::shared_ptr<VesselNetwork<DIM> > mpVesselNetwork;

    bool mIsSprouting;

    boost::shared_ptr<AbstractCellPopulation<DIM> > mpCellPopulation;

    boost::shared_ptr<RegularGrid<DIM> > mpGrid;

    boost::shared_ptr<Part<DIM> > mpBoundingDomain;


public:

    AbstractMigrationRule();

    virtual ~AbstractMigrationRule();

    static boost::shared_ptr<AbstractMigrationRule<DIM> > Create();

    virtual std::vector<DimensionalChastePoint<DIM> > GetDirections(const std::vector<boost::shared_ptr<VesselNode<DIM> > >& rNodes);

    virtual std::vector<int> GetIndices(const std::vector<boost::shared_ptr<VesselNode<DIM> > >& rNodes);

     void SetIsSprouting(bool isSprouting = true);

    void SetDiscreteContinuumSolver(boost::shared_ptr<AbstractDiscreteContinuumSolver<DIM> > pSolver);

    void SetNetwork(boost::shared_ptr<VesselNetwork<DIM> > pNetwork);

    void SetBoundingDomain(boost::shared_ptr<Part<DIM> > pPart);

    void SetGrid(boost::shared_ptr<RegularGrid<DIM> > pGrid);

    void SetCellPopulation(boost::shared_ptr<AbstractCellPopulation<DIM> > pCellPopulation);

};

#endif /* ABSTRACTMIGRATIONRULE_HPP_ */