Owen11CaUpdateRule.hpp

/*

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*/

#ifndef OWEN11CAUPDATERULE_HPP_
#define OWEN11CAUPDATERULE_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
#include "AbstractCaUpdateRule.hpp"
#include "CaBasedCellPopulation.hpp"
#include "VesselNetwork.hpp"
#include "UnitCollection.hpp"
#include "RegularGrid.hpp"

template<unsigned DIM>
class Owen11CaUpdateRule : public AbstractCaUpdateRule<DIM>
{
friend class TestCaUpdateRules;

private:

    units::quantity<unit::diffusivity> mDiffusionParameter;

    boost::shared_ptr<VesselNetwork<DIM> > mpVesselNetwork;

    boost::shared_ptr<RegularGrid<DIM> > mpRegularGrid;

    units::quantity<unit::length> mReferenceLengthScale;

    unsigned mCancerCellCarryingCapacity;

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCaUpdateRule<DIM> >(*this);
        archive & mDiffusionParameter;
        archive & mReferenceLengthScale;
        archive & mCancerCellCarryingCapacity;
    }

public:

    Owen11CaUpdateRule();

    ~Owen11CaUpdateRule();

    double EvaluateProbability(unsigned currentNodeIndex,
                               unsigned targetNodeIndex,
                               CaBasedCellPopulation<DIM>& rCellPopulation,
                               double dt,
                               double deltaX,
                               CellPtr cell);

    units::quantity<unit::diffusivity> GetDiffusionParameter();

    void SetVesselNetwork(boost::shared_ptr<VesselNetwork<DIM> > pVesselNetwork);

    void SetRegularGrid(boost::shared_ptr<RegularGrid<DIM> > pRegularGrid);

    void SetReferenceLengthScale(units::quantity<unit::length> referenceLengthScale);

    void SetDiffusionParameter(units::quantity<unit::diffusivity> diffusionParameter);

    void OutputUpdateRuleParameters(out_stream& rParamsFile);
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(Owen11CaUpdateRule)

#endif /*OWEN11CAUPDATERULE_HPP_*/