DiscreteSource.cpp

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#include "DiscreteSource.hpp"
#include "AbstractCellPopulation.hpp"
#include "VesselNetwork.hpp"
#include "GeometryTools.hpp"

template<unsigned DIM>
DiscreteSource<DIM>::DiscreteSource()
    :   mpRegularGrid(),
        mpMesh(),
        mPoints(),
        mLabel("Default"),
        mConstantInUValue(0.0*unit::mole_per_metre_cubed_per_second),
        mLinearInUValue(0.0*unit::per_second)
{

}

template<unsigned DIM>
DiscreteSource<DIM>::~DiscreteSource()
{

}

template<unsigned DIM>
boost::shared_ptr<DiscreteSource<DIM> > DiscreteSource<DIM>::Create()
{
    MAKE_PTR(DiscreteSource<DIM>, pSelf);
    return pSelf;
}

template<unsigned DIM>
std::vector<units::quantity<unit::concentration_flow_rate> > DiscreteSource<DIM>::GetConstantInUMeshValues()
{
    if(!mpMesh)
    {
        EXCEPTION("A mesh is required for this type of source");
    }

    // Loop through all points
    std::vector<units::quantity<unit::concentration_flow_rate> > values(mpMesh->GetNumElements(), 0.0*unit::mole_per_metre_cubed_per_second);
    std::vector<std::vector<unsigned> > point_element_map = mpMesh->GetPointElementMap(mPoints);
    for(unsigned idx=0; idx<point_element_map.size(); idx++)
    {
        values[idx] += mConstantInUValue * double(point_element_map[idx].size());
    }
    return values;
}

template<unsigned DIM>
std::vector<units::quantity<unit::rate> > DiscreteSource<DIM>::GetLinearInUMeshValues()
{
    if(!mpMesh)
    {
        EXCEPTION("A mesh is required for this type of source");
    }

    // Loop through all points
    std::vector<units::quantity<unit::rate> > values(mpMesh->GetNumElements(), 0.0*unit::per_second);
    std::vector<std::vector<unsigned> > point_element_map = mpMesh->GetPointElementMap(mPoints);
    for(unsigned idx=0; idx<point_element_map.size(); idx++)
    {
        values[idx] += mLinearInUValue * double(point_element_map[idx].size());
    }
    return values;
}

template<unsigned DIM>
std::vector<units::quantity<unit::concentration_flow_rate> > DiscreteSource<DIM>::GetConstantInURegularGridValues()
{
    if(!mpRegularGrid)
    {
        EXCEPTION("A regular grid is required for this type of source");
    }

    if(mPoints.size()==0)
    {
        EXCEPTION("A point is required for this type of source");
    }

    // Loop through all points
    std::vector<units::quantity<unit::concentration_flow_rate> > values(mpRegularGrid->GetNumberOfPoints(), 0.0*unit::mole_per_metre_cubed_per_second);
    std::vector<std::vector<unsigned> > point_point_map = mpRegularGrid->GetPointPointMap(mPoints);
    for(unsigned idx=0; idx<point_point_map.size(); idx++)
    {
        values[idx] += mConstantInUValue * double(point_point_map[idx].size());
    }
    return values;
}

template<unsigned DIM>
std::vector<units::quantity<unit::rate> > DiscreteSource<DIM>::GetLinearInURegularGridValues()
{
    if(!mpRegularGrid)
    {
        EXCEPTION("A regular grid is required for this type of source");
    }

    if(mPoints.size()==0)
    {
        EXCEPTION("A point is required for this type of source");
    }

    // Loop through all points
    std::vector<units::quantity<unit::rate> > values(mpRegularGrid->GetNumberOfPoints(), 0.0*unit::per_second);
    std::vector<std::vector<unsigned> > point_point_map = mpRegularGrid->GetPointPointMap(mPoints);
    for(unsigned idx=0; idx<point_point_map.size(); idx++)
    {
        values[idx] += mLinearInUValue * double(point_point_map[idx].size());
    }
    return values;
}

template<unsigned DIM>
void DiscreteSource<DIM>::SetLabelName(const std::string& label)
{
    mLabel = label;
}

template<unsigned DIM>
void DiscreteSource<DIM>::SetPoints(std::vector<DimensionalChastePoint<DIM> > points)
{
    mPoints = points;
}

template<unsigned DIM>
void DiscreteSource<DIM>::SetMesh(boost::shared_ptr<DiscreteContinuumMesh<DIM, DIM> > pMesh)
{
    mpMesh = pMesh;
}

template<unsigned DIM>
void DiscreteSource<DIM>::SetRegularGrid(boost::shared_ptr<RegularGrid<DIM> > pRegularGrid)
{
    mpRegularGrid = pRegularGrid;
}

template<unsigned DIM>
void DiscreteSource<DIM>::SetConstantInUValue(units::quantity<unit::concentration_flow_rate> value)
{
    mConstantInUValue = value;
}

template<unsigned DIM>
void DiscreteSource<DIM>::SetLinearInUValue(units::quantity<unit::rate> value)
{
    mLinearInUValue = value;
}

// Explicit instantiation
template class DiscreteSource<2>;
template class DiscreteSource<3>;