MichaelisMentenSteadyStateDiffusionReactionPde.hpp

/*

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 */

#ifndef MICHAELISMENTENSTEADYSTATEDIFFUSIONREACTIONPDE_HPP_
#define MICHAELISMENTENSTEADYSTATEDIFFUSIONREACTIONPDE_HPP_

#include <string>
#include "ChastePoint.hpp"
#include "UblasIncludes.hpp"
#include "SmartPointers.hpp"
#include "AbstractDiscreteContinuumNonLinearEllipticPde.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class MichaelisMentenSteadyStateDiffusionReactionPde : public AbstractDiscreteContinuumNonLinearEllipticPde<SPACE_DIM>
{
    units::quantity<unit::concentration> mMichaelisMentenThreshold;

public:

    MichaelisMentenSteadyStateDiffusionReactionPde();

    virtual ~MichaelisMentenSteadyStateDiffusionReactionPde();

    static boost::shared_ptr<MichaelisMentenSteadyStateDiffusionReactionPde<ELEMENT_DIM, SPACE_DIM> > Create();

    double ComputeConstantInUSourceTerm(const ChastePoint<SPACE_DIM>& rX, Element<ELEMENT_DIM, SPACE_DIM>* pElement);

    units::quantity<unit::concentration_flow_rate> ComputeConstantInUSourceTerm(unsigned gridIndex=0);

    c_matrix<double, SPACE_DIM, SPACE_DIM> ComputeDiffusionTerm(const ChastePoint<SPACE_DIM>& rX, double u);

    c_matrix<double, SPACE_DIM, SPACE_DIM> ComputeDiffusionTermPrime(const ChastePoint<SPACE_DIM>& rX, double u);

    double ComputeLinearSourceTerm(const ChastePoint<SPACE_DIM>& rX);

    double ComputeLinearInUCoeffInSourceTerm(const ChastePoint<SPACE_DIM>& rX, Element<ELEMENT_DIM, SPACE_DIM>* pElement);

    virtual units::quantity<unit::rate> ComputeLinearInUCoeffInSourceTerm(unsigned gridIndex=0);

    double ComputeNonlinearSourceTerm(const ChastePoint<SPACE_DIM>& rX, double u);

    units::quantity<unit::concentration_flow_rate> ComputeNonlinearSourceTerm(unsigned gridIndex, units::quantity<unit::concentration> u);

    double ComputeNonlinearSourceTermPrime(const ChastePoint<SPACE_DIM>& rX, double u);

    units::quantity<unit::rate> ComputeNonlinearSourceTermPrime(unsigned gridIndex, units::quantity<unit::concentration> u);

    units::quantity<unit::concentration> GetMichaelisMentenThreshold();

    void SetMichaelisMentenThreshold(units::quantity<unit::concentration> threshold);
};

#endif /*MICHAELISMENTENSTEADYSTATEDIFFUSIONREACTIONPDE_HPP_*/