Owen2011TrackingModifier< DIM > Class Template Reference

#include <Owen2011TrackingModifier.hpp>

Inheritance diagram for Owen2011TrackingModifier< DIM >:

Collaboration diagram for Owen2011TrackingModifier< DIM >:

Public Member Functions
	Owen2011TrackingModifier ()
virtual	~Owen2011TrackingModifier ()
virtual void	UpdateAtEndOfTimeStep (AbstractCellPopulation< DIM, DIM > &rCellPopulation)
virtual void	SetupSolve (AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory)
void	UpdateCellData (AbstractCellPopulation< DIM, DIM > &rCellPopulation)
void	OutputSimulationModifierParameters (out_stream &rParamsFile)

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	boost::serialization::access

Detailed Description

template<unsigned DIM>
class Owen2011TrackingModifier< DIM >

A modifier class to store in Cell Properties in CellData.

Definition at line 48 of file Owen2011TrackingModifier.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

Owen2011TrackingModifier< DIM >::Owen2011TrackingModifier

(

)

Default constructor.

Definition at line 44 of file Owen2011TrackingModifier.cpp.

Referenced by Owen2011TrackingModifier< DIM >::serialize().

template<unsigned DIM>

Owen2011TrackingModifier< DIM >::~Owen2011TrackingModifier ( )

virtual

Destructor.

Definition at line 50 of file Owen2011TrackingModifier.cpp.

Referenced by Owen2011TrackingModifier< DIM >::serialize().

Member Function Documentation

template<unsigned DIM>

void Owen2011TrackingModifier< DIM >::OutputSimulationModifierParameters

(

out_stream &

rParamsFile

)

Overridden OutputSimulationModifierParameters() method. Output any simulation modifier parameters to file.

Parameters

rParamsFile

the file stream to which the parameters are output

Definition at line 127 of file Owen2011TrackingModifier.cpp.

Referenced by Owen2011TrackingModifier< DIM >::serialize().

template<unsigned DIM>

template<class Archive >

void Owen2011TrackingModifier< DIM >::serialize ( Archive &  archive, const unsigned int  version  )

inlineprivate

Boost Serialization method for archiving/checkpointing. Archives the object and its member variables.

Parameters

archive	The boost archive.
version	The current version of this class.

Definition at line 60 of file Owen2011TrackingModifier.hpp.

References Owen2011TrackingModifier< DIM >::OutputSimulationModifierParameters(), Owen2011TrackingModifier< DIM >::Owen2011TrackingModifier(), Owen2011TrackingModifier< DIM >::SetupSolve(), Owen2011TrackingModifier< DIM >::UpdateAtEndOfTimeStep(), Owen2011TrackingModifier< DIM >::UpdateCellData(), and Owen2011TrackingModifier< DIM >::~Owen2011TrackingModifier().

template<unsigned DIM>

void Owen2011TrackingModifier< DIM >::SetupSolve ( AbstractCellPopulation< DIM, DIM > &  rCellPopulation, std::string  outputDirectory  )

virtual

Overridden SetupSolve() method.

Specifies what to do in the simulation before the start of the time loop.

Parameters

rCellPopulation	reference to the cell population
outputDirectory	the output directory, relative to where Chaste output is stored

Definition at line 61 of file Owen2011TrackingModifier.cpp.

References Owen2011TrackingModifier< DIM >::UpdateCellData().

Referenced by Owen2011TrackingModifier< DIM >::serialize().

template<unsigned DIM>

void Owen2011TrackingModifier< DIM >::UpdateAtEndOfTimeStep ( AbstractCellPopulation< DIM, DIM > &  rCellPopulation )

virtual

Overridden UpdateAtEndOfTimeStep() method.

Specifies what to do in the simulation at the end of each time step.

Parameters

rCellPopulation

reference to the cell population

Definition at line 55 of file Owen2011TrackingModifier.cpp.

References Owen2011TrackingModifier< DIM >::UpdateCellData().

Referenced by Owen2011TrackingModifier< DIM >::serialize().

template<unsigned DIM>

void Owen2011TrackingModifier< DIM >::UpdateCellData

(

AbstractCellPopulation< DIM, DIM > &

rCellPopulation

)

Helper method to store cell properties in the CellData.

Parameters

rCellPopulation

reference to the cell population

Definition at line 71 of file Owen2011TrackingModifier.cpp.

References Owen2011OxygenBasedCellCycleModel::GetP53(), Owen2011OxygenBasedCellCycleModel::GetPhi(), and Owen2011OxygenBasedCellCycleModel::GetVEGF().

Referenced by Owen2011TrackingModifier< DIM >::serialize(), Owen2011TrackingModifier< DIM >::SetupSolve(), and Owen2011TrackingModifier< DIM >::UpdateAtEndOfTimeStep().

Friends And Related Function Documentation

template<unsigned DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 51 of file Owen2011TrackingModifier.hpp.

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The documentation for this class was generated from the following files:

• projects/MicrovesselChaste/src/ode/Owen2011TrackingModifier.hpp
• projects/MicrovesselChaste/src/ode/Owen2011TrackingModifier.cpp