#include <NetworkToImage.hpp>

Collaboration diagram for NetworkToImage< DIM >:

Public Member Functions
	NetworkToImage ()

	~NetworkToImage ()

vtkSmartPointer< vtkImageData >	GetOutput ()

void	SetNetwork (boost::shared_ptr< VesselNetwork< DIM > > pNetwork)

void	SetGridSpacing (units::quantity< unit::length > spacing)

void	SetPaddingFactors (double paddingX, double paddingY, double paddingZ)

void	SetImageDimension (unsigned dimension)

void	Update ()

Static Public Member Functions
static boost::shared_ptr< NetworkToImage< DIM > >	Create ()

Private Attributes
vtkSmartPointer< vtkImageData >	mpImage

boost::shared_ptr< VesselNetwork< DIM > >	mpNetwork

units::quantity< unit::length >	mGridSpacing

c_vector< double, DIM >	mPaddingFactors

unsigned	mImageDimension

Detailed Description

template<unsigned DIM>
class NetworkToImage< DIM >

Convert a vessel network to vtk image data. This can be used for visualization or as input to centreline/mesh tools.

Definition at line 51 of file NetworkToImage.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

NetworkToImage< DIM >::NetworkToImage ( )

Constructor

Definition at line 46 of file NetworkToImage.cpp.

template<unsigned DIM>

NetworkToImage< DIM >::~NetworkToImage ( )

Destructor

Definition at line 64 of file NetworkToImage.cpp.

Member Function Documentation

template<unsigned DIM>

boost::shared_ptr< NetworkToImage< DIM > > NetworkToImage< DIM >::Create ( )

static

Factory constructor method

Returns: a pointer to the class

Definition at line 57 of file NetworkToImage.cpp.

Referenced by NetworkToSurface< DIM >::Update().

template<unsigned DIM>

vtkSmartPointer< vtkImageData > NetworkToImage< DIM >::GetOutput ( )

Get the image

Returns: a pointer to the image representation of the network

Definition at line 70 of file NetworkToImage.cpp.

References NetworkToImage< DIM >::mpImage.

template<unsigned DIM>

void NetworkToImage< DIM >::SetGridSpacing ( units::quantity< unit::length > spacing )

Set the pixel spacing for the image

Parameters

spacing the pixel spacing

Definition at line 89 of file NetworkToImage.cpp.

References NetworkToImage< DIM >::mGridSpacing.

template<unsigned DIM>

void NetworkToImage< DIM >::SetImageDimension ( unsigned dimension )

Set the image dimension. Although the class is templated over spatial dimension, it is often of interest to make 2D images. The image dimension can be set here.

Parameters

dimension the image dimension

Definition at line 106 of file NetworkToImage.cpp.

References NetworkToImage< DIM >::mImageDimension.

template<unsigned DIM>

void NetworkToImage< DIM >::SetNetwork ( boost::shared_ptr< VesselNetwork< DIM > > pNetwork )

Set the vessel network

Parameters

pNetwork the network

Definition at line 83 of file NetworkToImage.cpp.

References NetworkToImage< DIM >::mpNetwork.

template<unsigned DIM>

void NetworkToImage< DIM >::SetPaddingFactors	(	double	paddingX,
		double	paddingY,
		double	paddingZ
	)

Set the padding factors for the image. This is multiplied by the network extents to add padding. Eg. final_extent = original_extent * (1+padding factor)

Parameters

paddingX	the X padding factor
paddingY	the Y padding factor
paddingZ	the Z padding factor

Definition at line 95 of file NetworkToImage.cpp.

References NetworkToImage< DIM >::mPaddingFactors.

template<unsigned DIM>

void NetworkToImage< DIM >::Update ( )

Do the conversion

Definition at line 112 of file NetworkToImage.cpp.

References DistanceMap< DIM >::Create(), RegularGrid< DIM >::Create(), NetworkToImage< DIM >::mGridSpacing, NetworkToImage< DIM >::mImageDimension, NetworkToImage< DIM >::mPaddingFactors, NetworkToImage< DIM >::mpImage, and NetworkToImage< DIM >::mpNetwork.

Member Data Documentation

template<unsigned DIM>

units::quantity<unit::length> NetworkToImage< DIM >::mGridSpacing

private

The grid spacing

Definition at line 66 of file NetworkToImage.hpp.

Referenced by NetworkToImage< DIM >::SetGridSpacing(), and NetworkToImage< DIM >::Update().

template<unsigned DIM>

unsigned NetworkToImage< DIM >::mImageDimension

private

The dimension of the output image

Definition at line 76 of file NetworkToImage.hpp.

Referenced by NetworkToImage< DIM >::SetImageDimension(), and NetworkToImage< DIM >::Update().

template<unsigned DIM>

c_vector<double, DIM> NetworkToImage< DIM >::mPaddingFactors

private

The padding factors in each direction

Definition at line 71 of file NetworkToImage.hpp.

Referenced by NetworkToImage< DIM >::SetPaddingFactors(), and NetworkToImage< DIM >::Update().

template<unsigned DIM>

vtkSmartPointer<vtkImageData> NetworkToImage< DIM >::mpImage

private

The image

Definition at line 56 of file NetworkToImage.hpp.

Referenced by NetworkToImage< DIM >::GetOutput(), and NetworkToImage< DIM >::Update().

template<unsigned DIM>

boost::shared_ptr<VesselNetwork<DIM> > NetworkToImage< DIM >::mpNetwork

private

The vessel network

Definition at line 61 of file NetworkToImage.hpp.

Referenced by NetworkToImage< DIM >::SetNetwork(), and NetworkToImage< DIM >::Update().

The documentation for this class was generated from the following files:

projects/MicrovesselChaste/src/image/NetworkToImage.hpp
projects/MicrovesselChaste/src/image/NetworkToImage.cpp

Public Member Functions

Static Public Member Functions

Private Attributes

Detailed Description

template<unsigned DIM> class NetworkToImage< DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned DIM>
class NetworkToImage< DIM >