#include <StructuralAdaptationSolver.hpp>

Inheritance diagram for StructuralAdaptationSolver< DIM >:

Collaboration diagram for StructuralAdaptationSolver< DIM >:

Public Member Functions
	StructuralAdaptationSolver ()

virtual	~StructuralAdaptationSolver ()

boost::shared_ptr< FlowSolver< DIM > >	GetFlowSolver ()

virtual void	Iterate ()

void	AddPreFlowSolveCalculator (boost::shared_ptr< AbstractVesselNetworkCalculator< DIM > > pCalculator)

void	AddPostFlowSolveCalculator (boost::shared_ptr< AbstractVesselNetworkCalculator< DIM > > pCalculator)

void	SetFlowSolver (boost::shared_ptr< FlowSolver< DIM > > pSolver)

void	SetRadiusCalculator (boost::shared_ptr< RadiusCalculator< DIM > > pCalculator)

void	UpdateFlowSolver (bool doFullReset=false)

Public Member Functions inherited from AbstractStructuralAdaptationSolver< DIM >
	AbstractStructuralAdaptationSolver ()

virtual	~AbstractStructuralAdaptationSolver ()

double	GetTolerance () const

bool	GetWriteOutput () const

std::string	GetOutputFileName () const

units::quantity< unit::time >	GetTimeIncrement () const

void	SetTolerance (double tolerance)

void	SetTimeIncrement (units::quantity< unit::time > timeIncrement)

void	SetMaxIterations (unsigned iterations)

void	SetWriteOutput (bool writeFlag)

void	SetOutputFileName (const std::string &rFilename)

void	SetVesselNetwork (boost::shared_ptr< VesselNetwork< DIM > > pNetwork)

void	Solve ()

virtual void	Write ()

Static Public Member Functions
static boost::shared_ptr< StructuralAdaptationSolver< DIM > >	Create ()

Private Attributes
boost::shared_ptr< FlowSolver< DIM > >	mpFlowSolver

boost::shared_ptr< RadiusCalculator< DIM > >	mpRadiusCalculator

std::vector< boost::shared_ptr< AbstractVesselNetworkCalculator< DIM > > >	mPreFlowSolveCalculators

std::vector< boost::shared_ptr< AbstractVesselNetworkCalculator< DIM > > >	mPostFlowSolveCalculators

Additional Inherited Members
Protected Attributes inherited from AbstractStructuralAdaptationSolver< DIM >
double	mTolerance

units::quantity< unit::time >	mTimeIncrement

units::quantity< unit::time >	mReferenceTimeScale

bool	mWriteOutput

std::string	mOutputFileName

unsigned	mMaxIterations

boost::shared_ptr< VesselNetwork< DIM > >	mpVesselNetwork

Detailed Description

template<unsigned DIM>
class StructuralAdaptationSolver< DIM >

This is a concrete implementation of a structural adaptation solver. It iteratively changes vessel radii in response to a collection of flow based stimuli until the rate of change of the radius is below a specified tolerance.

Definition at line 51 of file StructuralAdaptationSolver.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

StructuralAdaptationSolver< DIM >::StructuralAdaptationSolver ( )

Constructor.

Definition at line 43 of file StructuralAdaptationSolver.cpp.

template<unsigned DIM>

StructuralAdaptationSolver< DIM >::~StructuralAdaptationSolver ( )

virtual

Destructor.

Definition at line 54 of file StructuralAdaptationSolver.cpp.

Member Function Documentation

template<unsigned DIM>

void StructuralAdaptationSolver< DIM >::AddPostFlowSolveCalculator ( boost::shared_ptr< AbstractVesselNetworkCalculator< DIM > > pCalculator )

Add a vessel network calculator to be run before the flow solve

Parameters

pCalculator a vessel network calculator

Definition at line 85 of file StructuralAdaptationSolver.cpp.

References StructuralAdaptationSolver< DIM >::mPostFlowSolveCalculators.

template<unsigned DIM>

void StructuralAdaptationSolver< DIM >::AddPreFlowSolveCalculator ( boost::shared_ptr< AbstractVesselNetworkCalculator< DIM > > pCalculator )

Add a vessel network calculator to be run before the flow solve

Parameters

pCalculator a vessel network calculator

Definition at line 79 of file StructuralAdaptationSolver.cpp.

References StructuralAdaptationSolver< DIM >::mPreFlowSolveCalculators.

template<unsigned DIM>

boost::shared_ptr< StructuralAdaptationSolver< DIM > > StructuralAdaptationSolver< DIM >::Create ( )

static

Factor constructor. Construct a new instance of the class and return a shared pointer to it.

Returns: a pointer to a new instance of the class.

Definition at line 60 of file StructuralAdaptationSolver.cpp.

template<unsigned DIM>

boost::shared_ptr< FlowSolver< DIM > > StructuralAdaptationSolver< DIM >::GetFlowSolver ( )

Get the flow calculator

Returns: the flow solver.

Definition at line 67 of file StructuralAdaptationSolver.cpp.

References StructuralAdaptationSolver< DIM >::mpFlowSolver.

template<unsigned DIM>

void StructuralAdaptationSolver< DIM >::Iterate ( )

virtual

Perform a single iteration to update the radius and calculators

Implements AbstractStructuralAdaptationSolver< DIM >.

Definition at line 97 of file StructuralAdaptationSolver.cpp.

References AbstractStructuralAdaptationSolver< DIM >::GetTimeIncrement(), StructuralAdaptationSolver< DIM >::mpFlowSolver, StructuralAdaptationSolver< DIM >::mPostFlowSolveCalculators, StructuralAdaptationSolver< DIM >::mpRadiusCalculator, StructuralAdaptationSolver< DIM >::mPreFlowSolveCalculators, AbstractStructuralAdaptationSolver< DIM >::mpVesselNetwork, and StructuralAdaptationSolver< DIM >::UpdateFlowSolver().

template<unsigned DIM>

void StructuralAdaptationSolver< DIM >::SetFlowSolver ( boost::shared_ptr< FlowSolver< DIM > > pSolver )

Set the flow calculator

Parameters

pSolver the flow solver.

Definition at line 91 of file StructuralAdaptationSolver.cpp.

References StructuralAdaptationSolver< DIM >::mpFlowSolver.

template<unsigned DIM>

void StructuralAdaptationSolver< DIM >::SetRadiusCalculator ( boost::shared_ptr< RadiusCalculator< DIM > > pCalculator )

Set the radius calculator

Parameters

pCalculator the radius calculator.

Definition at line 73 of file StructuralAdaptationSolver.cpp.

References StructuralAdaptationSolver< DIM >::mpRadiusCalculator.

template<unsigned DIM>

void StructuralAdaptationSolver< DIM >::UpdateFlowSolver ( bool doFullReset = false )

To be called if the vessel network changes between solves

Parameters

doFullReset fully reset all the solvers

Definition at line 154 of file StructuralAdaptationSolver.cpp.

References StructuralAdaptationSolver< DIM >::mpFlowSolver, StructuralAdaptationSolver< DIM >::mPreFlowSolveCalculators, and AbstractStructuralAdaptationSolver< DIM >::mpVesselNetwork.

Referenced by StructuralAdaptationSolver< DIM >::Iterate().

Member Data Documentation

template<unsigned DIM>

boost::shared_ptr<FlowSolver<DIM> > StructuralAdaptationSolver< DIM >::mpFlowSolver

private

A solver to calculate flow rates and pressures in the network

Definition at line 59 of file StructuralAdaptationSolver.hpp.

Referenced by StructuralAdaptationSolver< DIM >::GetFlowSolver(), StructuralAdaptationSolver< DIM >::Iterate(), StructuralAdaptationSolver< DIM >::SetFlowSolver(), and StructuralAdaptationSolver< DIM >::UpdateFlowSolver().

template<unsigned DIM>

std::vector<boost::shared_ptr<AbstractVesselNetworkCalculator<DIM> > > StructuralAdaptationSolver< DIM >::mPostFlowSolveCalculators

private

Calculators to be run after the flow solve

Definition at line 74 of file StructuralAdaptationSolver.hpp.

Referenced by StructuralAdaptationSolver< DIM >::AddPostFlowSolveCalculator(), and StructuralAdaptationSolver< DIM >::Iterate().

template<unsigned DIM>

boost::shared_ptr<RadiusCalculator<DIM> > StructuralAdaptationSolver< DIM >::mpRadiusCalculator

private

A calculator to determine radius changes

Definition at line 64 of file StructuralAdaptationSolver.hpp.

Referenced by StructuralAdaptationSolver< DIM >::Iterate(), and StructuralAdaptationSolver< DIM >::SetRadiusCalculator().

template<unsigned DIM>

std::vector<boost::shared_ptr<AbstractVesselNetworkCalculator<DIM> > > StructuralAdaptationSolver< DIM >::mPreFlowSolveCalculators

private

Calculators to be run before the flow solve

Definition at line 69 of file StructuralAdaptationSolver.hpp.

Referenced by StructuralAdaptationSolver< DIM >::AddPreFlowSolveCalculator(), StructuralAdaptationSolver< DIM >::Iterate(), and StructuralAdaptationSolver< DIM >::UpdateFlowSolver().

The documentation for this class was generated from the following files:

projects/MicrovesselChaste/src/simulation/flow/structural_adaptation/StructuralAdaptationSolver.hpp
projects/MicrovesselChaste/src/simulation/flow/structural_adaptation/StructuralAdaptationSolver.cpp

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

template<unsigned DIM> class StructuralAdaptationSolver< DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned DIM>
class StructuralAdaptationSolver< DIM >