#include <FiniteElementSolver.hpp>

Inheritance diagram for FiniteElementSolver< DIM >:

Collaboration diagram for FiniteElementSolver< DIM >:

Public Member Functions
	FiniteElementSolver ()

virtual	~FiniteElementSolver ()

void	Solve ()

void	SetGuess (const std::vector< double > &guess)

void	SetUseSimpleNetonSolver (bool useNewton)

void	SetUseLinearSolveForGuess (bool useLinearSolve)

void	Update ()

Public Member Functions inherited from AbstractUnstructuredGridDiscreteContinuumSolver< DIM >
	AbstractUnstructuredGridDiscreteContinuumSolver ()

virtual	~AbstractUnstructuredGridDiscreteContinuumSolver ()

boost::shared_ptr< DiscreteContinuumMesh< DIM > >	GetMesh ()

virtual std::vector< units::quantity< unit::concentration > >	GetConcentrations (const std::vector< DimensionalChastePoint< DIM > > &rSamplePoints)

virtual std::vector< units::quantity< unit::concentration > >	GetConcentrations (boost::shared_ptr< RegularGrid< DIM > > pGrid)

virtual std::vector< units::quantity< unit::concentration > >	GetConcentrations (boost::shared_ptr< DiscreteContinuumMesh< DIM > > pMesh)

virtual std::vector< units::quantity< unit::concentration > >	GetConcentrationsAtCentroids ()

virtual std::vector< double >	GetSolution (const std::vector< DimensionalChastePoint< DIM > > &rSamplePoints)

virtual std::vector< double >	GetSolution (boost::shared_ptr< RegularGrid< DIM > > pGrid)

virtual std::vector< double >	GetSolution (boost::shared_ptr< DiscreteContinuumMesh< DIM > > pMesh)

virtual vtkSmartPointer< vtkUnstructuredGrid >	GetVtkSolution ()

void	SetMesh (boost::shared_ptr< DiscreteContinuumMesh< DIM, DIM > > pMesh)

virtual void	Setup ()

virtual void	UpdateSolution (const std::vector< double > &rData)

virtual void	UpdateElementSolution (const std::vector< double > &rData)

virtual void	UpdateSolution (const std::vector< units::quantity< unit::concentration > > &rData)

virtual void	UpdateCellData ()

virtual void	Write ()

Public Member Functions inherited from AbstractDiscreteContinuumSolver< DIM >
	AbstractDiscreteContinuumSolver ()

virtual	~AbstractDiscreteContinuumSolver ()

void	AddBoundaryCondition (boost::shared_ptr< DiscreteContinuumBoundaryCondition< DIM > > pBoundaryCondition)

bool	CellPopulationIsSet ()

virtual std::vector< units::quantity< unit::concentration > >	GetConcentrations ()

const std::string &	GetLabel ()

boost::shared_ptr< AbstractDiscreteContinuumNonLinearEllipticPde< DIM, DIM > >	GetNonLinearPde ()

boost::shared_ptr< AbstractDiscreteContinuumLinearEllipticPde< DIM, DIM > >	GetPde ()

units::quantity< unit::concentration >	GetReferenceConcentration ()

virtual std::vector< double >	GetSolution ()

bool	HasRegularGrid ()

bool	HasUnstructuredGrid ()

void	SetCellPopulation (AbstractCellPopulation< DIM > &rCellPopulation, units::quantity< unit::length > cellPopulationReferenceLength, units::quantity< unit::concentration > cellPopulationReferenceConcentration)

void	SetFileHandler (boost::shared_ptr< OutputFileHandler > pOutputFileHandler)

void	SetFileName (const std::string &rFilename)

void	SetLabel (const std::string &rLabel)

void	SetPde (boost::shared_ptr< AbstractDiscreteContinuumLinearEllipticPde< DIM, DIM > > pPde)

void	SetNonLinearPde (boost::shared_ptr< AbstractDiscreteContinuumNonLinearEllipticPde< DIM, DIM > > pPde)

void	SetReferenceConcentration (units::quantity< unit::concentration > referenceConcentration)

void	SetVesselNetwork (boost::shared_ptr< VesselNetwork< DIM > > pNetwork)

void	SetWriteSolution (bool write=true)

Static Public Member Functions
static boost::shared_ptr< FiniteElementSolver< DIM > >	Create ()

Private Attributes
bool	mUseNewton

bool	mUseLinearSolveForGuess

std::vector< double >	mGuess

Additional Inherited Members
Protected Attributes inherited from AbstractUnstructuredGridDiscreteContinuumSolver< DIM >
vtkSmartPointer< vtkUnstructuredGrid >	mpVtkSolution

boost::shared_ptr< DiscreteContinuumMesh< DIM, DIM > >	mpMesh

Protected Attributes inherited from AbstractDiscreteContinuumSolver< DIM >
boost::shared_ptr< VesselNetwork< DIM > >	mpNetwork

AbstractCellPopulation< DIM > *	mpCellPopulation

units::quantity< unit::length >	mCellPopulationReferenceLength

units::quantity< unit::concentration >	mCellPopulationReferenceConcentration

boost::shared_ptr< OutputFileHandler >	mpOutputFileHandler

std::string	mFilename

std::string	mLabel

bool	IsSetupForSolve

bool	mWriteSolution

boost::shared_ptr< AbstractDiscreteContinuumLinearEllipticPde< DIM, DIM > >	mpPde

boost::shared_ptr< AbstractDiscreteContinuumNonLinearEllipticPde< DIM, DIM > >	mpNonLinearPde

std::vector< boost::shared_ptr< DiscreteContinuumBoundaryCondition< DIM > > >	mBoundaryConditions

units::quantity< unit::concentration >	mReferenceConcentration

std::vector< double >	mSolution

std::vector< units::quantity< unit::concentration > >	mConcentrations

bool	mHasRegularGrid

bool	mHasUnstructuredGrid

Detailed Description

template<unsigned DIM>
class FiniteElementSolver< DIM >

A finite element solver for linear elliptic PDEs with multiple discrete sinks or sources.

Definition at line 47 of file FiniteElementSolver.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

FiniteElementSolver< DIM >::FiniteElementSolver ( )

Constructor

Definition at line 43 of file FiniteElementSolver.cpp.

template<unsigned DIM>

FiniteElementSolver< DIM >::~FiniteElementSolver ( )

virtual

Destructor

Definition at line 53 of file FiniteElementSolver.cpp.

Member Function Documentation

template<unsigned DIM>

boost::shared_ptr< FiniteElementSolver< DIM > > FiniteElementSolver< DIM >::Create ( )

static

Construct a new instance of the class and return a shared pointer to it.

Returns: a shared pointer to a class instance.

Definition at line 59 of file FiniteElementSolver.cpp.

template<unsigned DIM>

void FiniteElementSolver< DIM >::SetGuess ( const std::vector< double > & guess )

Set the initial dimensionless guess

Parameters

guess the guess.

Definition at line 79 of file FiniteElementSolver.cpp.

References FiniteElementSolver< DIM >::mGuess.

template<unsigned DIM>

void FiniteElementSolver< DIM >::SetUseLinearSolveForGuess ( bool useLinearSolve )

Use the solution from a linear solver as the initial guess

Parameters

useLinearSolve use the solution from a linear solver as the initial guess

Definition at line 91 of file FiniteElementSolver.cpp.

References FiniteElementSolver< DIM >::mUseLinearSolveForGuess.

template<unsigned DIM>

void FiniteElementSolver< DIM >::SetUseSimpleNetonSolver ( bool useNewton )

Use Chaste's simple newton solve

Parameters

useNewton use Chaste's simple newton solve

Definition at line 85 of file FiniteElementSolver.cpp.

References FiniteElementSolver< DIM >::mUseNewton.

template<unsigned DIM>

void FiniteElementSolver< DIM >::Solve ( )

virtual

Overridden solve method

Implements AbstractUnstructuredGridDiscreteContinuumSolver< DIM >.

Definition at line 97 of file FiniteElementSolver.cpp.

template<unsigned DIM>

void FiniteElementSolver< DIM >::Update ( )

virtual

Overridden update method

Reimplemented from AbstractUnstructuredGridDiscreteContinuumSolver< DIM >.

Definition at line 66 of file FiniteElementSolver.cpp.

References AbstractDiscreteContinuumSolver< DIM >::mpNonLinearPde, and AbstractDiscreteContinuumSolver< DIM >::mpPde.

Member Data Documentation

template<unsigned DIM>

std::vector<double> FiniteElementSolver< DIM >::mGuess

private

An initial guess

Definition at line 67 of file FiniteElementSolver.hpp.

Referenced by FiniteElementSolver< DIM >::SetGuess().

template<unsigned DIM>

bool FiniteElementSolver< DIM >::mUseLinearSolveForGuess

private

Use the linear solution as a guess

Definition at line 62 of file FiniteElementSolver.hpp.

Referenced by FiniteElementSolver< DIM >::SetUseLinearSolveForGuess().

template<unsigned DIM>

bool FiniteElementSolver< DIM >::mUseNewton

private

Use the chaste newton solver

Definition at line 57 of file FiniteElementSolver.hpp.

Referenced by FiniteElementSolver< DIM >::SetUseSimpleNetonSolver(), and FiniteElementSolver< DIM >::Solve().

The documentation for this class was generated from the following files:

projects/MicrovesselChaste/src/pde/solvers/FiniteElementSolver.hpp
projects/MicrovesselChaste/src/pde/solvers/FiniteElementSolver.cpp

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

template<unsigned DIM> class FiniteElementSolver< DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned DIM>
class FiniteElementSolver< DIM >