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LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <LinearSteadyStateDiffusionReactionPde.hpp>

+ Inheritance diagram for LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >:
+ Collaboration diagram for LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions

 LinearSteadyStateDiffusionReactionPde ()
 
 ~LinearSteadyStateDiffusionReactionPde ()
 
double ComputeLinearInUCoeffInSourceTerm (const ChastePoint< SPACE_DIM > &rX, Element< ELEMENT_DIM, SPACE_DIM > *pElement)
 
units::quantity< unit::rate > ComputeLinearInUCoeffInSourceTerm (unsigned gridIndex=0)
 
void SetContinuumLinearInUTerm (units::quantity< unit::rate > linearInUTerm)
 
void UpdateDiscreteSourceStrengths ()
 
- Public Member Functions inherited from AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >
 AbstractDiscreteContinuumLinearEllipticPde ()
 
virtual ~AbstractDiscreteContinuumLinearEllipticPde ()
 
void AddDiscreteSource (boost::shared_ptr< DiscreteSource< SPACE_DIM > > pDiscreteSource)
 
double ComputeConstantInUSourceTerm (const ChastePoint< SPACE_DIM > &rX, Element< ELEMENT_DIM, SPACE_DIM > *pElement)
 
units::quantity< unit::concentration_flow_rate > ComputeConstantInUSourceTerm (unsigned gridIndex=0)
 
c_matrix< double, SPACE_DIM, SPACE_DIM > ComputeDiffusionTerm (const ChastePoint< SPACE_DIM > &)
 
units::quantity< unit::diffusivity > ComputeIsotropicDiffusionTerm ()
 
std::vector< boost::shared_ptr< DiscreteSource< SPACE_DIM > > > GetDiscreteSources ()
 
void SetContinuumConstantInUTerm (units::quantity< unit::concentration_flow_rate > constantInUTerm)
 
void SetIsotropicDiffusionConstant (units::quantity< unit::diffusivity > diffusivity)
 
void SetRegularGrid (boost::shared_ptr< RegularGrid< SPACE_DIM > > pRegularGrid)
 
void SetMesh (boost::shared_ptr< DiscreteContinuumMesh< ELEMENT_DIM, SPACE_DIM > > pMesh)
 
void SetReferenceConcentration (units::quantity< unit::concentration > referenceConcentration)
 
void SetUseRegularGrid (bool useRegularGrid)
 

Static Public Member Functions

static boost::shared_ptr< LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM > > Create ()
 

Private Attributes

units::quantity< unit::rate > mLinearInUTerm
 
std::vector< units::quantity< unit::rate > > mDiscreteLinearSourceStrengths
 

Additional Inherited Members

- Protected Attributes inherited from AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >
c_matrix< double, SPACE_DIM, SPACE_DIM > mDiffusionTensor
 
units::quantity< unit::diffusivity > mDiffusivity
 
units::quantity< unit::concentration_flow_rate > mConstantInUTerm
 
std::vector< boost::shared_ptr< DiscreteSource< SPACE_DIM > > > mDiscreteSources
 
boost::shared_ptr< RegularGrid< SPACE_DIM > > mpRegularGrid
 
boost::shared_ptr< DiscreteContinuumMesh< ELEMENT_DIM, SPACE_DIM > > mpMesh
 
bool mUseRegularGrid
 
std::vector< units::quantity< unit::concentration_flow_rate > > mDiscreteConstantSourceStrengths
 
units::quantity< unit::concentration > mReferenceConcentration
 

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >

Linear reaction diffusion PDE

Definition at line 49 of file LinearSteadyStateDiffusionReactionPde.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::LinearSteadyStateDiffusionReactionPde ( )

Constructor

Definition at line 41 of file LinearSteadyStateDiffusionReactionPde.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::~LinearSteadyStateDiffusionReactionPde ( )

Destructor

Definition at line 50 of file LinearSteadyStateDiffusionReactionPde.cpp.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::ComputeLinearInUCoeffInSourceTerm ( const ChastePoint< SPACE_DIM > &  rX,
Element< ELEMENT_DIM, SPACE_DIM > *  pElement 
)

Overwritten method to return the linear in U contribution to the Chaste FE solver

Parameters
rXgrid location
pElementpointer to containing element
Returns
source strength

Definition at line 63 of file LinearSteadyStateDiffusionReactionPde.cpp.

References BaseUnits::GetReferenceTimeScale(), BaseUnits::Instance(), LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::mDiscreteLinearSourceStrengths, and LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::mLinearInUTerm.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
units::quantity< unit::rate > LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::ComputeLinearInUCoeffInSourceTerm ( unsigned  gridIndex = 0)
virtual

Overwritten method to return the linear in U contribution to the regular grid solvers

Parameters
gridIndexgrid index
Returns
source strength

Implements AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >.

Definition at line 83 of file LinearSteadyStateDiffusionReactionPde.cpp.

References LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::mDiscreteLinearSourceStrengths, and LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::mLinearInUTerm.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
boost::shared_ptr< LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM > > LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::Create ( )
static

Factory Constructor

Returns
a pointer to an instance of the pde

Definition at line 56 of file LinearSteadyStateDiffusionReactionPde.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::SetContinuumLinearInUTerm ( units::quantity< unit::rate >  linearInUTerm)

Set the linear constant in U term

Parameters
linearInUTermthe linear constant in U term

Definition at line 100 of file LinearSteadyStateDiffusionReactionPde.cpp.

References LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::mLinearInUTerm.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::UpdateDiscreteSourceStrengths ( )
virtual

Update the discrete source strengths

Reimplemented from AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >.

Definition at line 106 of file LinearSteadyStateDiffusionReactionPde.cpp.

References LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::mDiscreteLinearSourceStrengths, AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >::mDiscreteSources, AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >::mpMesh, AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >::mpRegularGrid, AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >::mUseRegularGrid, and AbstractDiscreteContinuumLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >::UpdateDiscreteSourceStrengths().

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
std::vector<units::quantity<unit::rate> > LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::mDiscreteLinearSourceStrengths
private

The linear source strengths for each point on the grid or mesh

Definition at line 59 of file LinearSteadyStateDiffusionReactionPde.hpp.

Referenced by LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::ComputeLinearInUCoeffInSourceTerm(), and LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::UpdateDiscreteSourceStrengths().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
units::quantity<unit::rate> LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::mLinearInUTerm
private

The continuum linear in U term, discrete terms are added to this.

Definition at line 54 of file LinearSteadyStateDiffusionReactionPde.hpp.

Referenced by LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::ComputeLinearInUCoeffInSourceTerm(), and LinearSteadyStateDiffusionReactionPde< ELEMENT_DIM, SPACE_DIM >::SetContinuumLinearInUTerm().

The documentation for this class was generated from the following files: