#include <ImageToMesh.hpp>

Collaboration diagram for ImageToMesh< DIM >:

Public Member Functions
	ImageToMesh ()

	~ImageToMesh ()

boost::shared_ptr< DiscreteContinuumMesh< DIM, DIM > >	GetMesh ()

void	SetElementSize (units::quantity< unit::volume > elementSize)

void	SetInput (vtkSmartPointer< vtkImageData > pImage)

void	SetInputRaw (vtkImageData *pImage)

void	SetTissueDomain (boost::shared_ptr< Part< DIM > > pTissueDomain)

void	Update ()

Static Public Member Functions
static boost::shared_ptr< ImageToMesh< DIM > >	Create ()

Private Attributes
vtkSmartPointer< vtkImageData >	mpImage

units::quantity< unit::volume >	mElementSize

boost::shared_ptr< DiscreteContinuumMesh< DIM, DIM > >	mMesh

boost::shared_ptr< Part< DIM > >	mpDomain

Detailed Description

template<unsigned DIM>
class ImageToMesh< DIM >

Do finite element meshing of a region in an image

Definition at line 50 of file ImageToMesh.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

ImageToMesh< DIM >::ImageToMesh ( )

Constructor

Definition at line 54 of file ImageToMesh.cpp.

template<unsigned DIM>

ImageToMesh< DIM >::~ImageToMesh ( )

Destructor

Definition at line 71 of file ImageToMesh.cpp.

Member Function Documentation

template<unsigned DIM>

boost::shared_ptr< ImageToMesh< DIM > > ImageToMesh< DIM >::Create ( )

static

Factory constructor method

Definition at line 64 of file ImageToMesh.cpp.

template<unsigned DIM>

boost::shared_ptr< DiscreteContinuumMesh< DIM, DIM > > ImageToMesh< DIM >::GetMesh ( )

Get the mesh

Definition at line 77 of file ImageToMesh.cpp.

References ImageToMesh< DIM >::mMesh.

template<unsigned DIM>

void ImageToMesh< DIM >::SetElementSize ( units::quantity< unit::volume > elementSize )

Set the element size

Definition at line 96 of file ImageToMesh.cpp.

References ImageToMesh< DIM >::mElementSize.

template<unsigned DIM>

void ImageToMesh< DIM >::SetInput ( vtkSmartPointer< vtkImageData > pImage )

Set the image to be meshed

Definition at line 102 of file ImageToMesh.cpp.

References ImageToMesh< DIM >::mpImage.

template<unsigned DIM>

void ImageToMesh< DIM >::SetInputRaw ( vtkImageData * pImage )

Set the image to be meshed using a raw pointer, needed for Python wrapping

Definition at line 108 of file ImageToMesh.cpp.

References ImageToMesh< DIM >::mpImage.

template<unsigned DIM>

void ImageToMesh< DIM >::SetTissueDomain ( boost::shared_ptr< Part< DIM > > pTissueDomain )

Add a tissue domain to the mesh

Parameters

pTissueDomain a tissue domain for meshing

Definition at line 90 of file ImageToMesh.cpp.

References ImageToMesh< DIM >::mpDomain.

template<unsigned DIM>

void ImageToMesh< DIM >::Update ( )

Do the meshing

Definition at line 115 of file ImageToMesh.cpp.

References DiscreteContinuumMeshGenerator< ELEMENT_DIM, SPACE_DIM >::GetMesh(), BoundaryExtractor::GetOutput(), ImageToMesh< DIM >::mElementSize, ImageToMesh< DIM >::mMesh, ImageToMesh< DIM >::mpDomain, ImageToMesh< DIM >::mpImage, DiscreteContinuumMeshGenerator< ELEMENT_DIM, SPACE_DIM >::SetDomain(), BoundaryExtractor::SetDoSmoothing(), DiscreteContinuumMeshGenerator< ELEMENT_DIM, SPACE_DIM >::SetHoles(), BoundaryExtractor::SetInput(), DiscreteContinuumMeshGenerator< ELEMENT_DIM, SPACE_DIM >::SetMaxElementArea(), DiscreteContinuumMeshGenerator< ELEMENT_DIM, SPACE_DIM >::SetRegionMarkers(), BoundaryExtractor::SetSmoothingLength(), BoundaryExtractor::Update(), and DiscreteContinuumMeshGenerator< ELEMENT_DIM, SPACE_DIM >::Update().

Member Data Documentation

template<unsigned DIM>

units::quantity<unit::volume> ImageToMesh< DIM >::mElementSize

private

The target element size

Definition at line 60 of file ImageToMesh.hpp.

Referenced by ImageToMesh< DIM >::SetElementSize(), and ImageToMesh< DIM >::Update().

template<unsigned DIM>

boost::shared_ptr<DiscreteContinuumMesh<DIM, DIM> > ImageToMesh< DIM >::mMesh

private

The mesh

Definition at line 65 of file ImageToMesh.hpp.

Referenced by ImageToMesh< DIM >::GetMesh(), and ImageToMesh< DIM >::Update().

template<unsigned DIM>

boost::shared_ptr<Part<DIM> > ImageToMesh< DIM >::mpDomain

private

Tissue domain (optional)

Definition at line 70 of file ImageToMesh.hpp.

Referenced by ImageToMesh< DIM >::SetTissueDomain(), and ImageToMesh< DIM >::Update().

template<unsigned DIM>

vtkSmartPointer<vtkImageData> ImageToMesh< DIM >::mpImage

private

The image

Definition at line 55 of file ImageToMesh.hpp.

Referenced by ImageToMesh< DIM >::SetInput(), ImageToMesh< DIM >::SetInputRaw(), and ImageToMesh< DIM >::Update().

The documentation for this class was generated from the following files:

projects/MicrovesselChaste/src/image/ImageToMesh.hpp
projects/MicrovesselChaste/src/image/ImageToMesh.cpp

Public Member Functions

Static Public Member Functions

Private Attributes

Detailed Description

template<unsigned DIM> class ImageToMesh< DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned DIM>
class ImageToMesh< DIM >