#include <VesselBasedDiscreteSource.hpp>

Inheritance diagram for VesselBasedDiscreteSource< DIM >:

Collaboration diagram for VesselBasedDiscreteSource< DIM >:

Public Member Functions
	VesselBasedDiscreteSource ()

virtual	~VesselBasedDiscreteSource ()

std::vector< units::quantity< unit::concentration_flow_rate > >	GetConstantInUMeshValues ()

std::vector< units::quantity< unit::rate > >	GetLinearInUMeshValues ()

std::vector< units::quantity< unit::concentration_flow_rate > >	GetConstantInURegularGridValues ()

std::vector< units::quantity< unit::rate > >	GetLinearInURegularGridValues ()

void	SetVesselPermeability (units::quantity< unit::membrane_permeability > value)

void	SetReferenceConcentration (units::quantity< unit::concentration > value)

void	SetReferenceHaematocrit (units::quantity< unit::dimensionless > value)

Public Member Functions inherited from DiscreteSource< DIM >
	DiscreteSource ()

virtual	~DiscreteSource ()

void	SetLabelName (const std::string &rLabel)

void	SetPoints (std::vector< DimensionalChastePoint< DIM > > points)

void	SetRegularGrid (boost::shared_ptr< RegularGrid< DIM > > pRegularGrid)

void	SetMesh (boost::shared_ptr< DiscreteContinuumMesh< DIM, DIM > > pMesh)

void	SetConstantInUValue (units::quantity< unit::concentration_flow_rate > value)

void	SetLinearInUValue (units::quantity< unit::rate > value)

Static Public Member Functions
static boost::shared_ptr< VesselBasedDiscreteSource< DIM > >	Create ()

Static Public Member Functions inherited from DiscreteSource< DIM >
static boost::shared_ptr< DiscreteSource< DIM > >	Create ()

Protected Attributes
units::quantity< unit::membrane_permeability >	mVesselPermeability

units::quantity< unit::concentration >	mReferenceConcentration

units::quantity< unit::dimensionless >	mReferenceHaematocrit

Protected Attributes inherited from DiscreteSource< DIM >
boost::shared_ptr< RegularGrid< DIM > >	mpRegularGrid

boost::shared_ptr< DiscreteContinuumMesh< DIM, DIM > >	mpMesh

std::vector< DimensionalChastePoint< DIM > >	mPoints

std::string	mLabel

units::quantity< unit::concentration_flow_rate >	mConstantInUValue

units::quantity< unit::rate >	mLinearInUValue

Detailed Description

template<unsigned DIM>
class VesselBasedDiscreteSource< DIM >

This class calculates the value of discrete sources at grid/mesh locations for vessels

Definition at line 52 of file VesselBasedDiscreteSource.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

VesselBasedDiscreteSource< DIM >::VesselBasedDiscreteSource ( )

Constructor

Definition at line 43 of file VesselBasedDiscreteSource.cpp.

template<unsigned DIM>

VesselBasedDiscreteSource< DIM >::~VesselBasedDiscreteSource ( )

virtual

Destructor

Definition at line 53 of file VesselBasedDiscreteSource.cpp.

Member Function Documentation

template<unsigned DIM>

boost::shared_ptr< VesselBasedDiscreteSource< DIM > > VesselBasedDiscreteSource< DIM >::Create ( )

static

Factory constructor method

Returns: a pointer to an instance of the class

Definition at line 59 of file VesselBasedDiscreteSource.cpp.

template<unsigned DIM>

std::vector< units::quantity< unit::concentration_flow_rate > > VesselBasedDiscreteSource< DIM >::GetConstantInUMeshValues ( )

virtual

Return the values of the source strengths sampled on the mesh elements

Returns: a vector of source strengths

Reimplemented from DiscreteSource< DIM >.

Definition at line 66 of file VesselBasedDiscreteSource.cpp.

References DiscreteSource< DIM >::mpMesh, VesselBasedDiscreteSource< DIM >::mReferenceConcentration, VesselBasedDiscreteSource< DIM >::mReferenceHaematocrit, and VesselBasedDiscreteSource< DIM >::mVesselPermeability.

template<unsigned DIM>

std::vector< units::quantity< unit::concentration_flow_rate > > VesselBasedDiscreteSource< DIM >::GetConstantInURegularGridValues ( )

virtual

Return the values of the source strengths sampled on the regular grid

Returns: a vector of source strengths

Reimplemented from DiscreteSource< DIM >.

Definition at line 161 of file VesselBasedDiscreteSource.cpp.

References DiscreteSource< DIM >::mpRegularGrid, VesselBasedDiscreteSource< DIM >::mReferenceConcentration, VesselBasedDiscreteSource< DIM >::mReferenceHaematocrit, and VesselBasedDiscreteSource< DIM >::mVesselPermeability.

template<unsigned DIM>

std::vector< units::quantity< unit::rate > > VesselBasedDiscreteSource< DIM >::GetLinearInUMeshValues ( )

virtual

Return the values of the source strengths sampled on the mesh elements

Returns: a vector of source strengths

Reimplemented from DiscreteSource< DIM >.

Definition at line 113 of file VesselBasedDiscreteSource.cpp.

References DiscreteSource< DIM >::mpMesh, and VesselBasedDiscreteSource< DIM >::mVesselPermeability.

template<unsigned DIM>

std::vector< units::quantity< unit::rate > > VesselBasedDiscreteSource< DIM >::GetLinearInURegularGridValues ( )

virtual

Return the values of the source strengths sampled on the regular grid

Returns: a vector of source strengths

Reimplemented from DiscreteSource< DIM >.

Definition at line 185 of file VesselBasedDiscreteSource.cpp.

References DiscreteSource< DIM >::mpRegularGrid, and VesselBasedDiscreteSource< DIM >::mVesselPermeability.

template<unsigned DIM>

void VesselBasedDiscreteSource< DIM >::SetReferenceConcentration ( units::quantity< unit::concentration > value )

Set the value of the source for PRESCRIBED type sources

Parameters

value the value of the source

Definition at line 217 of file VesselBasedDiscreteSource.cpp.

References VesselBasedDiscreteSource< DIM >::mReferenceConcentration.

template<unsigned DIM>

void VesselBasedDiscreteSource< DIM >::SetReferenceHaematocrit ( units::quantity< unit::dimensionless > value )

Set the value of the source for PRESCRIBED type sources

Parameters

value the value of the source

Definition at line 223 of file VesselBasedDiscreteSource.cpp.

References VesselBasedDiscreteSource< DIM >::mReferenceHaematocrit.

template<unsigned DIM>

void VesselBasedDiscreteSource< DIM >::SetVesselPermeability ( units::quantity< unit::membrane_permeability > value )

Set the value of the source for PRESCRIBED type sources

Parameters

value the value of the source

Definition at line 211 of file VesselBasedDiscreteSource.cpp.

References VesselBasedDiscreteSource< DIM >::mVesselPermeability.

Member Data Documentation

template<unsigned DIM>

units::quantity<unit::concentration> VesselBasedDiscreteSource< DIM >::mReferenceConcentration

protected

The reference concentration, supplied by well perfused vessels

Definition at line 65 of file VesselBasedDiscreteSource.hpp.

Referenced by VesselBasedDiscreteSource< DIM >::GetConstantInUMeshValues(), VesselBasedDiscreteSource< DIM >::GetConstantInURegularGridValues(), and VesselBasedDiscreteSource< DIM >::SetReferenceConcentration().

template<unsigned DIM>

units::quantity<unit::dimensionless> VesselBasedDiscreteSource< DIM >::mReferenceHaematocrit

protected

The reference haematocrit, used as a proxy for vessel perfusion

Definition at line 70 of file VesselBasedDiscreteSource.hpp.

Referenced by VesselBasedDiscreteSource< DIM >::GetConstantInUMeshValues(), VesselBasedDiscreteSource< DIM >::GetConstantInURegularGridValues(), and VesselBasedDiscreteSource< DIM >::SetReferenceHaematocrit().

template<unsigned DIM>

units::quantity<unit::membrane_permeability> VesselBasedDiscreteSource< DIM >::mVesselPermeability

protected

The vessel permeability

Definition at line 60 of file VesselBasedDiscreteSource.hpp.

Referenced by VesselBasedDiscreteSource< DIM >::GetConstantInUMeshValues(), VesselBasedDiscreteSource< DIM >::GetConstantInURegularGridValues(), VesselBasedDiscreteSource< DIM >::GetLinearInUMeshValues(), VesselBasedDiscreteSource< DIM >::GetLinearInURegularGridValues(), and VesselBasedDiscreteSource< DIM >::SetVesselPermeability().

The documentation for this class was generated from the following files:

projects/MicrovesselChaste/src/pde/discrete_sources/VesselBasedDiscreteSource.hpp
projects/MicrovesselChaste/src/pde/discrete_sources/VesselBasedDiscreteSource.cpp

Public Member Functions

Static Public Member Functions

Protected Attributes

Detailed Description

template<unsigned DIM> class VesselBasedDiscreteSource< DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned DIM>
class VesselBasedDiscreteSource< DIM >