#include <Owen2011SproutingRule.hpp>

Inheritance diagram for Owen2011SproutingRule< DIM >:

Collaboration diagram for Owen2011SproutingRule< DIM >:

Public Member Functions
	Owen2011SproutingRule ()

virtual	~Owen2011SproutingRule ()

virtual std::vector< boost::shared_ptr< VesselNode< DIM > > >	GetSprouts (const std::vector< boost::shared_ptr< VesselNode< DIM > > > &rNodes)

void	SetHalfMaxVegf (units::quantity< unit::concentration > halfMaxVegf)

Public Member Functions inherited from LatticeBasedSproutingRule< DIM >
	LatticeBasedSproutingRule ()

virtual	~LatticeBasedSproutingRule ()

void	SetGrid (boost::shared_ptr< RegularGrid< DIM > > pGrid)

Public Member Functions inherited from AbstractSproutingRule< DIM >
	AbstractSproutingRule ()

virtual	~AbstractSproutingRule ()

void	SetDiscreteContinuumSolver (boost::shared_ptr< AbstractDiscreteContinuumSolver< DIM > > pSolver)

void	SetVesselNetwork (boost::shared_ptr< VesselNetwork< DIM > > pVesselNetwork)

void	SetSproutingProbability (units::quantity< unit::rate > probability)

void	SetVesselEndCutoff (units::quantity< unit::length > cutoff)

Static Public Member Functions
static boost::shared_ptr< Owen2011SproutingRule< DIM > >	Create ()

Static Public Member Functions inherited from LatticeBasedSproutingRule< DIM >
static boost::shared_ptr< LatticeBasedSproutingRule< DIM > >	Create ()

Protected Attributes
units::quantity< unit::concentration >	mHalfMaxVegf

std::vector< units::quantity< unit::concentration > >	mVegfField

Protected Attributes inherited from LatticeBasedSproutingRule< DIM >
boost::shared_ptr< RegularGrid< DIM > >	mpGrid

units::quantity< unit::length >	mTipExclusionRadius

Protected Attributes inherited from AbstractSproutingRule< DIM >
boost::shared_ptr< AbstractDiscreteContinuumSolver< DIM > >	mpSolver

units::quantity< unit::rate >	mSproutingProbability

boost::shared_ptr< VesselNetwork< DIM > >	mpVesselNetwork

units::quantity< unit::length >	mVesselEndCutoff

Detailed Description

template<unsigned DIM>
class Owen2011SproutingRule< DIM >

A sprouting rule based on the paper of Owen et al. 2011

Definition at line 51 of file Owen2011SproutingRule.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

Owen2011SproutingRule< DIM >::Owen2011SproutingRule ( )

Constructor.

Definition at line 43 of file Owen2011SproutingRule.cpp.

References Owen11Parameters::mpMaximumSproutingRate, AbstractSproutingRule< DIM >::mSproutingProbability, LatticeBasedSproutingRule< DIM >::mTipExclusionRadius, and AbstractSproutingRule< DIM >::mVesselEndCutoff.

template<unsigned DIM>

Owen2011SproutingRule< DIM >::~Owen2011SproutingRule ( )

virtual

Destructor.

Definition at line 64 of file Owen2011SproutingRule.cpp.

Member Function Documentation

template<unsigned DIM>

boost::shared_ptr< Owen2011SproutingRule< DIM > > Owen2011SproutingRule< DIM >::Create ( )

static

Construct a new instance of the class and return a shared pointer to it.

Returns: a pointer to a new instance of the class

Definition at line 57 of file Owen2011SproutingRule.cpp.

template<unsigned DIM>

std::vector< boost::shared_ptr< VesselNode< DIM > > > Owen2011SproutingRule< DIM >::GetSprouts ( const std::vector< boost::shared_ptr< VesselNode< DIM > > > & rNodes )

virtual

Overwritten method to return nodes which may sprout

Parameters

rNodes nodes to check for sprouting

Returns: a vector of nodes which may sprout

Reimplemented from LatticeBasedSproutingRule< DIM >.

Definition at line 76 of file Owen2011SproutingRule.cpp.

References BaseUnits::GetReferenceTimeScale(), BaseUnits::Instance(), Owen2011SproutingRule< DIM >::mHalfMaxVegf, LatticeBasedSproutingRule< DIM >::mpGrid, AbstractSproutingRule< DIM >::mpSolver, AbstractSproutingRule< DIM >::mpVesselNetwork, AbstractSproutingRule< DIM >::mSproutingProbability, LatticeBasedSproutingRule< DIM >::mTipExclusionRadius, Owen2011SproutingRule< DIM >::mVegfField, and AbstractSproutingRule< DIM >::mVesselEndCutoff.

template<unsigned DIM>

void Owen2011SproutingRule< DIM >::SetHalfMaxVegf ( units::quantity< unit::concentration > halfMaxVegf )

Set the half max vegf

Parameters

halfMaxVegf the half max vegf

Definition at line 70 of file Owen2011SproutingRule.cpp.

References Owen2011SproutingRule< DIM >::mHalfMaxVegf.

Member Data Documentation

template<unsigned DIM>

units::quantity<unit::concentration> Owen2011SproutingRule< DIM >::mHalfMaxVegf

protected

The half maximum vegf

Definition at line 59 of file Owen2011SproutingRule.hpp.

Referenced by Owen2011SproutingRule< DIM >::GetSprouts(), and Owen2011SproutingRule< DIM >::SetHalfMaxVegf().

template<unsigned DIM>

std::vector<units::quantity<unit::concentration> > Owen2011SproutingRule< DIM >::mVegfField

protected

The vegf field sampled at the vessel lattice sites

Definition at line 64 of file Owen2011SproutingRule.hpp.

Referenced by Owen2011SproutingRule< DIM >::GetSprouts().

The documentation for this class was generated from the following files:

projects/MicrovesselChaste/src/simulation/angiogenesis/sprouting_rules/Owen2011SproutingRule.hpp
projects/MicrovesselChaste/src/simulation/angiogenesis/sprouting_rules/Owen2011SproutingRule.cpp

Public Member Functions

Static Public Member Functions

Protected Attributes

Detailed Description

template<unsigned DIM> class Owen2011SproutingRule< DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned DIM>
class Owen2011SproutingRule< DIM >