It is recommended that you follow the tutorials in the provided order.
Demo Problems
These tutorials demonstrate some applications of biological interest, but do not discuss functionality in detail.
Simulating a Scratch Assay - setting up a simple cellular automaton, 3D visualization and real-time plotting.
Simulating Spheroid Growth - setting up an off-lattice cell population and reaction-diffusion PDEs.
Simulating a Epithelial Sheet Tensile Test - setting up a Vertex based cell population and using polymorphism for time varying boundary conditions.
Simulating Cell Sorting - setting up a Potts based simulation and labelling cells.
Basic Simulations
These tutorials demonstrate basic functionality. They are based on the C++ versions in Chaste. See the Chaste User Tutorials page for more detailed information.
Running Mesh Based Simulations - the simplest (and first to be implemented in Chaste) type of cell-based simulation.
Running Node Based Simulations - includes details of how to simplify cell-based tests.
Running Vertex Based Simulations - includes adding boundary conditions and removing cells from simulations.
Running Potts Based Simulations - lattice-based simulations.