chaste.ode package

Module contents

Ode Module

class chaste.ode.AbstractOdeSystem

CalculateRootFunction((AbstractOdeSystem)arg1, (float)time, (VecDouble)rY) → float :

C++ signature :

double CalculateRootFunction(AbstractOdeSystem {lvalue},double,std::vector<double, std::allocator<double> >)

CalculateRootFunction( (AbstractOdeSystem)arg1, (float)time, (VecDouble)rY) -> float :

C++ signature :

double CalculateRootFunction(AbstractOdeSystem_wrapper {lvalue},double,std::vector<double, std::allocator<double> >)

CalculateStoppingEvent((AbstractOdeSystem)arg1, (float)time, (VecDouble)rY) → bool :

C++ signature :

bool CalculateStoppingEvent(AbstractOdeSystem {lvalue},double,std::vector<double, std::allocator<double> >)

CalculateStoppingEvent( (AbstractOdeSystem)arg1, (float)time, (VecDouble)rY) -> bool :

C++ signature :

bool CalculateStoppingEvent(AbstractOdeSystem_wrapper {lvalue},double,std::vector<double, std::allocator<double> >)

EvaluateYDerivatives((AbstractOdeSystem)arg1, (float)time, (VecDouble)rY, (VecDouble)rDY) → None :

C++ signature :

void EvaluateYDerivatives(AbstractOdeSystem {lvalue},double,std::vector<double, std::allocator<double> >,std::vector<double, std::allocator<double> > {lvalue})

EvaluateYDerivatives( (AbstractOdeSystem)arg1, (float)arg2, (VecDouble)arg3, (VecDouble)arg4) -> None :

C++ signature :

void EvaluateYDerivatives(AbstractOdeSystem_wrapper {lvalue},double,std::vector<double, std::allocator<double> >,std::vector<double, std::allocator<double> > {lvalue})

GetUseAnalyticJacobian((AbstractOdeSystem)arg1) → bool :

C++ signature :

bool GetUseAnalyticJacobian(AbstractOdeSystem {lvalue})

rGetConstStateVariables((AbstractOdeSystem)arg1) → VecDouble :

C++ signature :

std::vector<double, std::allocator<double> > rGetConstStateVariables(AbstractOdeSystem {lvalue})

class chaste.ode.AbstractOdeSystemInformation

GetAnyVariableIndex((AbstractOdeSystemInformation)arg1, (str)rName) → int :

C++ signature :

unsigned int GetAnyVariableIndex(AbstractOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

GetAnyVariableUnits((AbstractOdeSystemInformation)arg1, (int)index) → str :

C++ signature :

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > GetAnyVariableUnits(AbstractOdeSystemInformation {lvalue},unsigned int)

GetAttribute((AbstractOdeSystemInformation)arg1, (str)rName) → float :

C++ signature :

double GetAttribute(AbstractOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

GetDerivedQuantityIndex((AbstractOdeSystemInformation)arg1, (str)rName) → int :

C++ signature :

unsigned int GetDerivedQuantityIndex(AbstractOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

GetDerivedQuantityUnits((AbstractOdeSystemInformation)arg1, (int)index) → str :

C++ signature :

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > GetDerivedQuantityUnits(AbstractOdeSystemInformation {lvalue},unsigned int)

GetFreeVariableName((AbstractOdeSystemInformation)arg1) → str :

C++ signature :

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > GetFreeVariableName(AbstractOdeSystemInformation {lvalue})

GetFreeVariableUnits((AbstractOdeSystemInformation)arg1) → str :

C++ signature :

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > GetFreeVariableUnits(AbstractOdeSystemInformation {lvalue})

GetInitialConditions((AbstractOdeSystemInformation)arg1) → VecDouble :

C++ signature :

std::vector<double, std::allocator<double> > GetInitialConditions(AbstractOdeSystemInformation {lvalue})

GetNumberOfAttributes((AbstractOdeSystemInformation)arg1) → int :

C++ signature :

unsigned int GetNumberOfAttributes(AbstractOdeSystemInformation {lvalue})

GetNumberOfDerivedQuantities((AbstractOdeSystemInformation)arg1) → int :

C++ signature :

unsigned int GetNumberOfDerivedQuantities(AbstractOdeSystemInformation {lvalue})

GetNumberOfParameters((AbstractOdeSystemInformation)arg1) → int :

C++ signature :

unsigned int GetNumberOfParameters(AbstractOdeSystemInformation {lvalue})

GetParameterIndex((AbstractOdeSystemInformation)arg1, (str)rName) → int :

C++ signature :

unsigned int GetParameterIndex(AbstractOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

GetParameterUnits((AbstractOdeSystemInformation)arg1, (int)index) → str :

C++ signature :

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > GetParameterUnits(AbstractOdeSystemInformation {lvalue},unsigned int)

GetStateVariableIndex((AbstractOdeSystemInformation)arg1, (str)rName) → int :

C++ signature :

unsigned int GetStateVariableIndex(AbstractOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

GetStateVariableUnits((AbstractOdeSystemInformation)arg1, (int)index) → str :

C++ signature :

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > GetStateVariableUnits(AbstractOdeSystemInformation {lvalue},unsigned int)

GetSystemName((AbstractOdeSystemInformation)arg1) → str :

C++ signature :

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > GetSystemName(AbstractOdeSystemInformation {lvalue})

HasAnyVariable((AbstractOdeSystemInformation)arg1, (str)rName) → bool :

C++ signature :

bool HasAnyVariable(AbstractOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

HasAttribute((AbstractOdeSystemInformation)arg1, (str)rName) → bool :

C++ signature :

bool HasAttribute(AbstractOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

HasDerivedQuantity((AbstractOdeSystemInformation)arg1, (str)rName) → bool :

C++ signature :

bool HasDerivedQuantity(AbstractOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

HasParameter((AbstractOdeSystemInformation)arg1, (str)rName) → bool :

C++ signature :

bool HasParameter(AbstractOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

HasStateVariable((AbstractOdeSystemInformation)arg1, (str)rName) → bool :

C++ signature :

bool HasStateVariable(AbstractOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

Initialise((AbstractOdeSystemInformation)arg1) → None :

C++ signature :

void Initialise(AbstractOdeSystemInformation_wrapper {lvalue})

SetDefaultInitialCondition((AbstractOdeSystemInformation)arg1, (int)index, (float)initialCondition) → None :

C++ signature :

void SetDefaultInitialCondition(AbstractOdeSystemInformation {lvalue},unsigned int,double)

SetDefaultInitialConditions((AbstractOdeSystemInformation)arg1, (VecDouble)rInitialConditions) → None :

C++ signature :

void SetDefaultInitialConditions(AbstractOdeSystemInformation {lvalue},std::vector<double, std::allocator<double> >)

rGetDerivedQuantityNames((AbstractOdeSystemInformation)arg1) → VecString :

C++ signature :

std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > rGetDerivedQuantityNames(AbstractOdeSystemInformation {lvalue})

rGetDerivedQuantityUnits((AbstractOdeSystemInformation)arg1) → VecString :

C++ signature :

std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > rGetDerivedQuantityUnits(AbstractOdeSystemInformation {lvalue})

rGetParameterNames((AbstractOdeSystemInformation)arg1) → VecString :

C++ signature :

std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > rGetParameterNames(AbstractOdeSystemInformation {lvalue})

rGetParameterUnits((AbstractOdeSystemInformation)arg1) → VecString :

C++ signature :

std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > rGetParameterUnits(AbstractOdeSystemInformation {lvalue})

rGetStateVariableNames((AbstractOdeSystemInformation)arg1) → VecString :

C++ signature :

std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > rGetStateVariableNames(AbstractOdeSystemInformation {lvalue})

rGetStateVariableUnits((AbstractOdeSystemInformation)arg1) → VecString :

C++ signature :

std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > rGetStateVariableUnits(AbstractOdeSystemInformation {lvalue})

class chaste.ode.AbstractPythonOdeSystemInformation

AddVariableName((AbstractPythonOdeSystemInformation)arg1, (str)rName) → None :

C++ signature :

void AddVariableName(AbstractPythonOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

AddVariableUnit((AbstractPythonOdeSystemInformation)arg1, (str)rUnit) → None :

C++ signature :

void AddVariableUnit(AbstractPythonOdeSystemInformation {lvalue},std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)

Initialise((AbstractPythonOdeSystemInformation)arg1) → None :

C++ signature :

void Initialise(AbstractPythonOdeSystemInformation_wrapper {lvalue})

SetIsInitialised((AbstractPythonOdeSystemInformation)arg1[, (bool)isInitialized=True]) → None :

C++ signature :

void SetIsInitialised(AbstractPythonOdeSystemInformation {lvalue} [,bool=True])