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GreensFunctionSolver< DIM > Member List

This is the complete list of members for GreensFunctionSolver< DIM >, including all inherited members.

AbstractDiscreteContinuumSolver()AbstractDiscreteContinuumSolver< DIM >
AbstractRegularGridDiscreteContinuumSolver()AbstractRegularGridDiscreteContinuumSolver< DIM >
AddBoundaryCondition(boost::shared_ptr< DiscreteContinuumBoundaryCondition< DIM > > pBoundaryCondition)AbstractDiscreteContinuumSolver< DIM >
CellPopulationIsSet()AbstractDiscreteContinuumSolver< DIM >
GenerateSubSegments()GreensFunctionSolver< DIM >private
GenerateTissuePoints()GreensFunctionSolver< DIM >private
GetConcentrations(const std::vector< DimensionalChastePoint< DIM > > &rSamplePoints)AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
GetConcentrations(boost::shared_ptr< RegularGrid< DIM > > pGrid)AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
GetConcentrations(boost::shared_ptr< DiscreteContinuumMesh< DIM > > pMesh)AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
AbstractDiscreteContinuumSolver::GetConcentrations()AbstractDiscreteContinuumSolver< DIM >virtual
GetGrid()AbstractRegularGridDiscreteContinuumSolver< DIM >
GetLabel()AbstractDiscreteContinuumSolver< DIM >
GetNonLinearPde()AbstractDiscreteContinuumSolver< DIM >
GetPde()AbstractDiscreteContinuumSolver< DIM >
GetReferenceConcentration()AbstractDiscreteContinuumSolver< DIM >
GetSolution(const std::vector< DimensionalChastePoint< DIM > > &rSamplePoints)AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
GetSolution(boost::shared_ptr< RegularGrid< DIM > > pGrid)AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
GetSolution(boost::shared_ptr< DiscreteContinuumMesh< DIM > > pMesh)AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
AbstractDiscreteContinuumSolver::GetSolution()AbstractDiscreteContinuumSolver< DIM >virtual
GetTissueTissueInteractionMatrix()GreensFunctionSolver< DIM >private
GetTissueVesselInteractionMatrix()GreensFunctionSolver< DIM >private
GetVesselTissueInteractionMatrix()GreensFunctionSolver< DIM >private
GetVesselVesselInteractionMatrix()GreensFunctionSolver< DIM >private
GetVtkSolution()AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
GreensFunctionSolver()GreensFunctionSolver< DIM >
HasRegularGrid()AbstractDiscreteContinuumSolver< DIM >
HasUnstructuredGrid()AbstractDiscreteContinuumSolver< DIM >
IsSetupForSolveAbstractDiscreteContinuumSolver< DIM >protected
mBoundaryConditionsAbstractDiscreteContinuumSolver< DIM >protected
mCellPopulationReferenceConcentrationAbstractDiscreteContinuumSolver< DIM >protected
mCellPopulationReferenceLengthAbstractDiscreteContinuumSolver< DIM >protected
mConcentrationsAbstractDiscreteContinuumSolver< DIM >protected
mFilenameAbstractDiscreteContinuumSolver< DIM >protected
mGttGreensFunctionSolver< DIM >private
mGtvGreensFunctionSolver< DIM >private
mGvtGreensFunctionSolver< DIM >private
mGvvGreensFunctionSolver< DIM >private
mHasRegularGridAbstractDiscreteContinuumSolver< DIM >protected
mHasUnstructuredGridAbstractDiscreteContinuumSolver< DIM >protected
mLabelAbstractDiscreteContinuumSolver< DIM >protected
mpCellPopulationAbstractDiscreteContinuumSolver< DIM >protected
mpDomainGreensFunctionSolver< DIM >private
mpNetworkAbstractDiscreteContinuumSolver< DIM >protected
mpNonLinearPdeAbstractDiscreteContinuumSolver< DIM >protected
mpOutputFileHandlerAbstractDiscreteContinuumSolver< DIM >protected
mpPdeAbstractDiscreteContinuumSolver< DIM >protected
mpRegularGridAbstractRegularGridDiscreteContinuumSolver< DIM >protected
mpVtkSolutionAbstractRegularGridDiscreteContinuumSolver< DIM >protected
mReferenceConcentrationAbstractDiscreteContinuumSolver< DIM >protected
mSegmentConcentrationGreensFunctionSolver< DIM >private
mSegmentPointMapGreensFunctionSolver< DIM >private
mSinkCoordinatesGreensFunctionSolver< DIM >private
mSinkPointMapGreensFunctionSolver< DIM >private
mSinkRatesGreensFunctionSolver< DIM >private
mSolutionAbstractDiscreteContinuumSolver< DIM >protected
mSourceRatesGreensFunctionSolver< DIM >private
mSubSegmentCoordinatesGreensFunctionSolver< DIM >private
mSubsegmentCutoffGreensFunctionSolver< DIM >private
mSubSegmentLengthsGreensFunctionSolver< DIM >private
mWriteSolutionAbstractDiscreteContinuumSolver< DIM >protected
SetCellPopulation(AbstractCellPopulation< DIM > &rCellPopulation, units::quantity< unit::length > cellPopulationReferenceLength, units::quantity< unit::concentration > cellPopulationReferenceConcentration)AbstractDiscreteContinuumSolver< DIM >
SetFileHandler(boost::shared_ptr< OutputFileHandler > pOutputFileHandler)AbstractDiscreteContinuumSolver< DIM >
SetFileName(const std::string &rFilename)AbstractDiscreteContinuumSolver< DIM >
SetGrid(boost::shared_ptr< RegularGrid< DIM > > pRegularGrid)AbstractRegularGridDiscreteContinuumSolver< DIM >
SetLabel(const std::string &rLabel)AbstractDiscreteContinuumSolver< DIM >
SetNonLinearPde(boost::shared_ptr< AbstractDiscreteContinuumNonLinearEllipticPde< DIM, DIM > > pPde)AbstractDiscreteContinuumSolver< DIM >
SetPde(boost::shared_ptr< AbstractDiscreteContinuumLinearEllipticPde< DIM, DIM > > pPde)AbstractDiscreteContinuumSolver< DIM >
SetReferenceConcentration(units::quantity< unit::concentration > referenceConcentration)AbstractDiscreteContinuumSolver< DIM >
SetSubSegmentCutoff(units::quantity< unit::length > value)GreensFunctionSolver< DIM >
Setup()AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
SetVesselNetwork(boost::shared_ptr< VesselNetwork< DIM > > pNetwork)AbstractDiscreteContinuumSolver< DIM >
SetWriteSolution(bool write=true)AbstractDiscreteContinuumSolver< DIM >
Solve()GreensFunctionSolver< DIM >virtual
Update()AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
UpdateCellData()AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
UpdateGreensFunctionMatrices(bool updateGtt=0, bool updateGvv=0, bool updateGtv=0, bool updateGvt=0)GreensFunctionSolver< DIM >private
UpdateSolution(std::vector< double > &rData)AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
UpdateSolution(std::vector< units::quantity< unit::concentration > > &rData)AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
AbstractDiscreteContinuumSolver::UpdateSolution(const std::vector< double > &rData)AbstractDiscreteContinuumSolver< DIM >virtual
AbstractDiscreteContinuumSolver::UpdateSolution(const std::vector< units::quantity< unit::concentration > > &rData)AbstractDiscreteContinuumSolver< DIM >virtual
Write()AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
WriteSolution(std::map< std::string, std::vector< units::quantity< unit::concentration > > > &segmentPointData)GreensFunctionSolver< DIM >private
~AbstractDiscreteContinuumSolver()AbstractDiscreteContinuumSolver< DIM >virtual
~AbstractRegularGridDiscreteContinuumSolver()AbstractRegularGridDiscreteContinuumSolver< DIM >virtual
~GreensFunctionSolver()GreensFunctionSolver< DIM >