chaste.cell_based package
=========================

Module contents
---------------

.. automodule:: chaste.cell_based
    :members:
    :undoc-members:
    :show-inheritance:

.. autoclass:: chaste.cell_based.Identifiable
    :members:

.. autoclass:: chaste.cell_based.Cell
    :members:

.. autoclass:: chaste.cell_based.CellPropertyCollection
    :members:

.. autoclass:: chaste.cell_based.CellId
    :members:

.. autoclass:: chaste.cell_based.CellLabel
    :members:

.. autoclass:: chaste.cell_based.CellData
    :members:

.. autoclass:: chaste.cell_based.CellAncestor
    :members:

.. autoclass:: chaste.cell_based.CellPropertyRegistry
    :members:

.. autoclass:: chaste.cell_based.SimulationTime
    :members:

.. autoclass:: chaste.cell_based.OnLatticeSimulation2
    :members:

.. autoclass:: chaste.cell_based.OnLatticeSimulation3
    :members:

.. autoclass:: chaste.cell_based.DiffusionCaUpdateRule2
    :members:

.. autoclass:: chaste.cell_based.DiffusionCaUpdateRule3
    :members:

.. autoclass:: chaste.cell_based.AbstractCaUpdateRule2
    :members:

.. autoclass:: chaste.cell_based.AbstractCaUpdateRule3
    :members:

.. autoclass:: chaste.cell_based.AbstractUpdateRule2
    :members:

.. autoclass:: chaste.cell_based.AbstractUpdateRule3
    :members:

.. autoclass:: chaste.cell_based.VtkSceneModifier2
    :members:

.. autoclass:: chaste.cell_based.VtkSceneModifier3
    :members:

.. autoclass:: chaste.cell_based.AbstractTargetAreaModifier2
    :members:

.. autoclass:: chaste.cell_based.AbstractTargetAreaModifier3
    :members:

.. autoclass:: chaste.cell_based.SimpleTargetAreaModifier2
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.. autoclass:: chaste.cell_based.SimpleTargetAreaModifier3
    :members:

.. autoclass:: chaste.cell_based.NagaiHondaForce2
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.. autoclass:: chaste.cell_based.NagaiHondaForce3
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.. autoclass:: chaste.cell_based.AbstractPottsUpdateRule2
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.. autoclass:: chaste.cell_based.AbstractPottsUpdateRule3
    :members:

.. autoclass:: chaste.cell_based.VolumeConstraintPottsUpdateRule2
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.. autoclass:: chaste.cell_based.VolumeConstraintPottsUpdateRule3
    :members:

.. autoclass:: chaste.cell_based.SurfaceAreaConstraintPottsUpdateRule2
    :members:

.. autoclass:: chaste.cell_based.SurfaceAreaConstraintPottsUpdateRule3
    :members:

.. autoclass:: chaste.cell_based.DifferentialAdhesionPottsUpdateRule2
    :members:

.. autoclass:: chaste.cell_based.DifferentialAdhesionPottsUpdateRule3
    :members:

.. autoclass:: chaste.cell_based.AdhesionPottsUpdateRule2
    :members:

.. autoclass:: chaste.cell_based.AdhesionPottsUpdateRule3
    :members:

.. autoclass:: chaste.cell_based.SphereGeometryBoundaryCondition2
    :members:

.. autoclass:: chaste.cell_based.SphereGeometryBoundaryCondition3
    :members:

.. autoclass:: chaste.cell_based.AbstractCellKiller2
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.. autoclass:: chaste.cell_based.AbstractCellKiller3
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.. autoclass:: chaste.cell_based.PlaneBasedCellKiller2
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.. autoclass:: chaste.cell_based.PlaneBasedCellKiller3
    :members:

.. autoclass:: chaste.cell_based.ApoptoticCellKiller2
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.. autoclass:: chaste.cell_based.ApoptoticCellKiller3
    :members:

.. autoclass:: chaste.cell_based.RandomCellKiller2
    :members:

.. autoclass:: chaste.cell_based.RandomCellKiller3
    :members:

.. autoclass:: chaste.cell_based.CellwiseSourceEllipticPde2
    :members:

.. autoclass:: chaste.cell_based.CellwiseSourceEllipticPde3
    :members:

.. autoclass:: chaste.cell_based.AbstractPdeModifier2
    :members:

.. autoclass:: chaste.cell_based.AbstractPdeModifier3
    :members:

.. autoclass:: chaste.cell_based.AbstractGrowingDomainPdeModifier2
    :members:

.. autoclass:: chaste.cell_based.AbstractGrowingDomainPdeModifier3
    :members:

.. autoclass:: chaste.cell_based.EllipticGrowingDomainPdeModifier2
    :members:

.. autoclass:: chaste.cell_based.EllipticGrowingDomainPdeModifier3
    :members:

.. autoclass:: chaste.cell_based.AbstractCellBasedSimulation2_2
    :members:

.. autoclass:: chaste.cell_based.AbstractCellBasedSimulation3_3
    :members:

.. autoclass:: chaste.cell_based.OffLatticeSimulation2_2
    :members:

.. autoclass:: chaste.cell_based.OffLatticeSimulation3_3
    :members:

.. autoclass:: chaste.cell_based.AbstractCellBasedSimulationModifier2_2
    :members:

.. autoclass:: chaste.cell_based.AbstractCellBasedSimulationModifier3_3
    :members:

.. autoclass:: chaste.cell_based.AbstractTwoBodyInteractionForce2_2
    :members:

.. autoclass:: chaste.cell_based.AbstractTwoBodyInteractionForce3_3
    :members:

.. autoclass:: chaste.cell_based.AbstractForce2_2
    :members:

.. autoclass:: chaste.cell_based.AbstractForce3_3
    :members:

.. autoclass:: chaste.cell_based.GeneralisedLinearSpringForce2_2
    :members:

.. autoclass:: chaste.cell_based.GeneralisedLinearSpringForce3_3
    :members:

.. autoclass:: chaste.cell_based.AbstractCellPopulationBoundaryCondition2_2
    :members:

.. autoclass:: chaste.cell_based.AbstractCellPopulationBoundaryCondition3_3
    :members:

.. autoclass:: chaste.cell_based.PlaneBoundaryCondition2_2
    :members:

.. autoclass:: chaste.cell_based.PlaneBoundaryCondition3_3
    :members:

.. autoclass:: chaste.cell_based.AttractingPlaneBoundaryCondition2_2
    :members:

.. autoclass:: chaste.cell_based.AttractingPlaneBoundaryCondition3_3
    :members:

.. autoclass:: chaste.cell_based.AbstractLinearEllipticPde2_2
    :members:

.. autoclass:: chaste.cell_based.AbstractLinearEllipticPde3_3
    :members:

.. autoclass:: chaste.cell_based.AbstractLinearPde2_2
    :members:

.. autoclass:: chaste.cell_based.AbstractLinearPde3_3
    :members:

.. autoclass:: chaste.cell_based.AbstractCellProperty
    :members:

.. autoclass:: chaste.cell_based.AbstractCellProliferativeType
    :members:

.. autoclass:: chaste.cell_based.StemCellProliferativeType
    :members:

.. autoclass:: chaste.cell_based.DefaultCellProliferativeType
    :members:

.. autoclass:: chaste.cell_based.TransitCellProliferativeType
    :members:

.. autoclass:: chaste.cell_based.DifferentiatedCellProliferativeType
    :members:

.. autoclass:: chaste.cell_based.AbstractCellMutationState
    :members:

.. autoclass:: chaste.cell_based.ApcOneHitCellMutationState
    :members:

.. autoclass:: chaste.cell_based.ApcTwoHitCellMutationState
    :members:

.. autoclass:: chaste.cell_based.BetaCateninOneHitCellMutationState
    :members:

.. autoclass:: chaste.cell_based.WildTypeCellMutationState
    :members:

.. autoclass:: chaste.cell_based.AbstractCellCycleModel
    :members:

.. autoclass:: chaste.cell_based.AbstractPhaseBasedCellCycleModel
    :members:

.. autoclass:: chaste.cell_based.AbstractSimpleCellCycleModel
    :members:

.. autoclass:: chaste.cell_based.AbstractSimplePhaseBasedCellCycleModel
    :members:

.. autoclass:: chaste.cell_based.AbstractSimpleGenerationalCellCycleModel
    :members:

.. autoclass:: chaste.cell_based.UniformCellCycleModel
    :members:

.. autoclass:: chaste.cell_based.SimpleOxygenBasedCellCycleModel
    :members:

.. autoclass:: chaste.cell_based.UniformG1GenerationalCellCycleModel
    :members:

.. autoclass:: chaste.cell_based.NoCellCycleModel
    :members:

.. autoclass:: chaste.cell_based.CellsGenerator<UniformCellCycleModel, 2>
    :members:

.. autoclass:: chaste.cell_based.CellsGenerator<UniformCellCycleModel, 3>
    :members:

.. autoclass:: chaste.cell_based.CellsGenerator<SimpleOxygenBasedCellCycleModel, 2>
    :members:

.. autoclass:: chaste.cell_based.CellsGenerator<SimpleOxygenBasedCellCycleModel, 3>
    :members:

.. autoclass:: chaste.cell_based.CellsGenerator<UniformG1GenerationalCellCycleModel, 2>
    :members:

.. autoclass:: chaste.cell_based.CellsGenerator<UniformG1GenerationalCellCycleModel, 3>
    :members:

.. autoclass:: chaste.cell_based.CellsGenerator<NoCellCycleModel, 2>
    :members:

.. autoclass:: chaste.cell_based.CellsGenerator<NoCellCycleModel, 3>
    :members:

.. autoclass:: chaste.cell_based.AbstractOnLatticeCellPopulation<2>
    :members:

.. autoclass:: chaste.cell_based.AbstractOnLatticeCellPopulation<3>
    :members:

.. autoclass:: chaste.cell_based.AbstractCellPopulation<2,2>
    :members:

.. autoclass:: chaste.cell_based.AbstractCellPopulation<3,3>
    :members:

.. autoclass:: chaste.cell_based.AbstractCentreBasedCellPopulation<2,2>
    :members:

.. autoclass:: chaste.cell_based.AbstractCentreBasedCellPopulation<3,3>
    :members:

.. autoclass:: chaste.cell_based.AbstractOffLatticeCellPopulation<2,2>
    :members:

.. autoclass:: chaste.cell_based.AbstractOffLatticeCellPopulation<3,3>
    :members:

.. autoclass:: chaste.cell_based.NodeBasedCellPopulation<2>
    :members:

.. autoclass:: chaste.cell_based.NodeBasedCellPopulation<3>
    :members:

.. autoclass:: chaste.cell_based.CaBasedCellPopulation<2>
    :members:

.. autoclass:: chaste.cell_based.CaBasedCellPopulation<3>
    :members:

.. autoclass:: chaste.cell_based.VertexBasedCellPopulation<2>
    :members:

.. autoclass:: chaste.cell_based.VertexBasedCellPopulation<3>
    :members:

.. autoclass:: chaste.cell_based.PottsBasedCellPopulation<2>
    :members:

.. autoclass:: chaste.cell_based.PottsBasedCellPopulation<3>
    :members:

.. autoclass:: chaste.cell_based.MeshBasedCellPopulationWithGhostNodes<2>
    :members:

.. autoclass:: chaste.cell_based.MeshBasedCellPopulationWithGhostNodes<3>
    :members:

.. autoclass:: chaste.cell_based.MeshBasedCellPopulation<2,2>
    :members:

.. autoclass:: chaste.cell_based.MeshBasedCellPopulation<3,3>
    :members: