#!/usr/bin/env python
"""PyChaste Module
"""
__copyright__ = """Copyright (c) 2005-2016, University of Oxford.
All rights reserved.
University of Oxford means the Chancellor, Masters and Scholars of the
University of Oxford, having an administrative office at Wellington
Square, Oxford OX1 2JD, UK.
This file is part of Chaste.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of the University of Oxford nor the names of its
contributors may be used to endorse or promote products derived from this
software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
"""
import os, sys
import warnings
# At the moment there are many harmless duplicate registration warnings from boost python. Ignore them until a suitable
# way to avoid duplicate registration during wrapper building is found.
warnings.filterwarnings("ignore")
from _chaste_project_PyChaste_preload import *
import chaste.core
[docs]def init(master_output_directory = os.getcwd()):
import petsc4py
# If CHASTE_TEST_OUTPUT is not set give it a user specified value, or CWD if there is none
if os.environ.get('CHASTE_TEST_OUTPUT') is None:
os.environ["CHASTE_TEST_OUTPUT"] = master_output_directory
petsc4py.init(sys.argv)
return chaste.core.OutputFileHandler("", False)